Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02910 ATGGAGCTTCAATGTTTCTACATTCTTCATCTCACTGTTATGTTCCTAAGTATGTTTCCTCAGTTACTCAACTGCCAACAAGAATATCTCAATAGCACTGTCTTTGACTGCACTAACAACCCTTCTGTACCAAAAGGATACCTCTGCAATGGCCTTAAAAAGTCATGCACTTCCTTTTTAGTTTTCAAGTCAAAACCTCCCTATGACAAACCTGCAAAAATTGCCAACCTTCTTGGATCTGAAGCCTCTACTATAGCCTCGATCAACAAGATAACCATAAATGAGAAGATTCCTTCAAATAAATCAATCTTTGTCCCGGTTTTTTGTTCATGTGCTGGAAATATCTACCAGCATAGCACATCTTACTCTGTCAAGCAGAATGACACCTATTATGAGTTGGTAAAAGAAACTTATCAAGGCCTTACAACCTGCCAGGCATTGATGGGTCAGAATTACTATGCTCCTGTCAACATTGCAGTTGGTGCTGAGCTTACAGTTCCAGTACTATGTGCTTGTCCAACGAAAAACCTGACAGCAAAAGGGGTTACATCCTTGCTAGTTCACATGGTGAACTACGGTGACACAGTTAAATCCATAGGAGAAGCTTATGGTGTTGATGAACCTAGCATGCGAGAGGCCAATGAGTTACCGGTGCTACAAAGTGCAAACAGCACTGTGATCCTCTTTGCTTTGACGCCTATAATAGTTCCTCTGAGAAGCAAGAGTTGTAAAGAGAACCCAGAGAGATTCTACTGCAAATGTTTTGAGGAACTACATGCTGATGGAAGCTCCAAGGGTGTCTTCTGTGATGAATCTCATCGTCAAAAACTCCCTGCAAAATTGGTTGCTGCCTCAGGTATTGGAATTGGTACAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAAATTATATCAATGCATAATGAAAAAGAGAGAAAGAATCCGAAAGGAAAAGCTGTTCGGGCAAAACGGCGGCTACTTGTTACAAGAGAAGTTATCATCATACGGAAACGGAGAAATGGCAAAGCTTTTTACTGCAGAGGAGCTGCAAAGAGCAACAGATAACTATAACCGAAGTAGGTTTCTCGGCCAGGGTGGCTATGGCACGGTGTACAAAGGAATGTTACCTGATGGAACCATAGTAGCAGTTAAAAAGTCGAAACAGCTTGACAGGAACCAGATAGAAACTTTTGTCAATGAAGTAGTCATCTTATCTAACATCAACCACAGAAACATTGTCAAACTCTTAGGTTGCTGTCTTGAGACAGAAACCCCATTACTTGTTTACGAATTTATTCCAAACGGAACTCTTTCTGAACATATACATAGGAAAGACCATGAGTCGTCCCTTTCATGGGAAAATCGCCTTAGAATTGCTTGTGAAGTTGCTGGAGCAGTTTCATATATGCATTTTTCAGCTTCTATTCCAATCTTCCATAGAGACATCAAACCCACCAACATACTCTTAGATAGTAACTATAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAATACCACTAGATAAGACTCATCTAACCACATTTGTAGGCGGAACTTTTGGGTACATAGACCCTGAATATTTTCAGTCCAGTCAATTTACAGATAAGAGTGATGTATATAGTTTTGGCGTTGTTCTTGTAGAGATTATAACCGGTAGAAAGCCCAACTCATTCTATGATGAAGATGATGGTCAGAATTTGATTGCACAATTCATTTCTGTAACGAAAGAGAACCAACTTCCTGAAATTGTAGATTCCAGAGTGCAAAAGGAAGCCGGGAAAGACACCATTCTTACTATTTCAAATCTTGCAATGAGGTGTTTGAGACTTAATGGTAAAAAAAGACCAACAATGAAAGAGGTTTCAGCGGAATTAGAAGCACTGAGAAAGGCGCAAAGTTCCTTTCAAATCAACCATGATATTGACGAATCATCAAGTGATGATGAACAATCATTTGGGCACATAATCAATGAAACAACAACAGAGCAAGAATCAACAGAGGAAAGCATTTCAGTTTCCTTACAAATCGAATCCGCGTCCTTCTGA 2049 0.3982 MELQCFYILHLTVMFLSMFPQLLNCQQEYLNSTVFDCTNNPSVPKGYLCNGLKKSCTSFLVFKSKPPYDKPAKIANLLGSEASTIASINKITINEKIPSNKSIFVPVFCSCAGNIYQHSTSYSVKQNDTYYELVKETYQGLTTCQALMGQNYYAPVNIAVGAELTVPVLCACPTKNLTAKGVTSLLVHMVNYGDTVKSIGEAYGVDEPSMREANELPVLQSANSTVILFALTPIIVPLRSKSCKENPERFYCKCFEELHADGSSKGVFCDESHRQKLPAKLVAASGIGIGTGFLCLFLLGYKLYQCIMKKRERIRKEKLFGQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKKSKQLDRNQIETFVNEVVILSNINHRNIVKLLGCCLETETPLLVYEFIPNGTLSEHIHRKDHESSLSWENRLRIACEVAGAVSYMHFSASIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSIPLDKTHLTTFVGGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVEIITGRKPNSFYDEDDGQNLIAQFISVTKENQLPEIVDSRVQKEAGKDTILTISNLAMRCLRLNGKKRPTMKEVSAELEALRKAQSSFQINHDIDESSSDDEQSFGHIINETTTEQESTEESISVSLQIESASF 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02910 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vivi6g02910 682 SUPERFAMILY Protein kinase-like (PK-like) 339 626 IPR011009 -
Vivi6g02910 682 CDD STKc_IRAK 362 629 - -
Vivi6g02910 682 Pfam Protein kinase domain 356 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02910 682 Pfam LysM domain 188 216 IPR018392 -
Vivi6g02910 682 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02910 682 Gene3D Phosphorylase Kinase; domain 1 338 431 - -
Vivi6g02910 682 MobiDBLite consensus disorder prediction 642 682 - -
Vivi6g02910 682 FunFam Wall-associated receptor kinase 2 432 649 - -
Vivi6g02910 682 FunFam Wall-associated receptor kinase 2 327 431 - -
Vivi6g02910 682 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Vivi6g02910 682 MobiDBLite consensus disorder prediction 651 682 - -
Vivi6g02910 682 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 152 640 IPR045274 GO:0007166
Vivi6g02910 682 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02910 682 Gene3D Transferase(Phosphotransferase) domain 1 432 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02910 Vivi-Chr6 116123981 116127271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02910 286 633 Receptor kinase-like Gene Family AT1G16130 57.714 1.23e-141 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi6g02910 Pkinase 7.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02910 - - gmx:100795455 1035.02