Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02907 ATGTCCTCTCCTCACAGCTACTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATAACCCTCGCTTTCCTCGTCCTCCTCGCCACTCTCTTCCTCTCTTTCTACCTATGTTGCCGCACCAACCACAACAACAATAACCCCAACAACAACAATAATAATCCTAACAACTACACTGAAGGTATCGTTTTGTCACGTGACATCTTCATATCTGAAACCGATGAAGAAAACCAACTCGCCGAAGAAAACACCGTGGTCGGTCTAGAAGACAACGTGATAAACTCCTATCCGAGGTTTCAATTCAACAGAGACAACGCAACTGTCTTAGGACAAAACACAACGTGCTCTATTTGTTTGTGTGAGTACAAGGATTCGGAGATGGTGAGAATGATGCCGGAGTGTCGTCATTATTTTCATCTCTGCTGTCTTGATTCGTGGTTGAAGCTTAACGGTTCTTGTCCGGTTTGTCGAAACTCCCCGCTTCCAACGCCGCTAGCTACTCCGCTTCAAGAGGTTGTTCCGCTTTCTCAGTACGGTGCTGATCGGAGACGAAGAAGGTGA 558 0.4695 MSSPHSYFTNLGLGYSIAITLAFLVLLATLFLSFYLCCRTNHNNNNPNNNNNNPNNYTEGIVLSRDIFISETDEENQLAEENTVVGLEDNVINSYPRFQFNRDNATVLGQNTTCSICLCEYKDSEMVRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLATPLQEVVPLSQYGADRRRRR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02907 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Vivi6g02907 185 SUPERFAMILY RING/U-box 113 161 - -
Vivi6g02907 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 160 IPR013083 -
Vivi6g02907 185 SMART ring_2 114 155 IPR001841 -
Vivi6g02907 185 PANTHER RING-H2 FINGER PROTEIN ATL67 5 184 IPR044289 GO:0016567|GO:0016740
Vivi6g02907 185 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02907 Vivi-Chr6 116045998 116046982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02907 1 175 C3H Transcription Factor Family AT5G07040 38.286 9.22e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02907 - - rcu:125370724 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02907 6 116045998 116046982 Vivi6g02907 6 116045998 116046982 ECH
Vivi6g02907 6 116045998 116046982 Vivi7g04360 7 113396606 113398162 PCT