Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02857 ATGGAACAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACCGTCACTTCCACCACCAACACACCTACAACACCCTCTGTCTCCTCTTCCACCTCCTCTATTTTCCCTCTCCAACCCGAACCTTGTACCTTCTCCTCTATGTTTCCCTCCGAACAAAAACCTCAAACTTTCTCACTTTCCACACACCCTTTTGAACCAAGAACCTCCATTGAGGAATTGCATGAACTTTGCAAGCCTTTCTTTTCTAGATCAGAGCCTCTCTCTTTGCAAACCTCTCCTCTGTTTTCTTCGTTCTCTTATACTTCCTCTGTAGCTCCCAAATCACCTCAAACAACACAAGACAAACCACAACAACAACAGAAAACCAAACAATCACACCAAGGTGATTCTCTCACCAATCCAAGATCAAAAAGAAGGAAAAACCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGCCTCTCTTCAGACATATGGGCATGGAGAAAATACGGACAAAAACCCATTAAAGGGTCACCATATCCAAGGGGTTATTATAGATGTAGCAGTTCAAAAGGCTGTTTAGCGAGAAAACAAGTTGAAAGAAACAGATCAGATCCAACAATGTTCATAGTAACATATACATCTGAGCACAACCATCCTGCTCCAACTCACAAAAACTCTCTCGCTGGTTCGTCTCGGCAGAAGCCATTAACGCCACCTCAAGCTCAAGCTGAAGGTGAGACAAGCAACAAAGATGTAGCAAAAGCCTCTTCTCCTGCTACTGCTACTACTACTACTACCTCAGGAGGTGAAGAAGAAGAGGTTCAGAATCAAGGAGAAAAGTGTGAGAGCAAGGAGGATTCTTTGATGGATGATGAAGAAGGGGGAGGAGATGAGTTTGGTTTATCTGATGTTGTTTTGAGTGATGATTTCTTTGATAGTTTGGATGAACTGAGTCAACTCGGTGGTTCTGGTTCTGGAGAATGTTTTACAGATCCATTTTCTTCTGGTATAGGGATTCCTAATTGGGCTGCTGCTACGGCTGCAGGTGGTAGCTGA 1047 0.4365 MEQDWDLHAVVRGCSTVTSTTNTPTTPSVSSSTSSIFPLQPEPCTFSSMFPSEQKPQTFSLSTHPFEPRTSIEELHELCKPFFSRSEPLSLQTSPLFSSFSYTSSVAPKSPQTTQDKPQQQQKTKQSHQGDSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTSEHNHPAPTHKNSLAGSSRQKPLTPPQAQAEGETSNKDVAKASSPATATTTTTSGGEEEEVQNQGEKCESKEDSLMDDEEGGGDEFGLSDVVLSDDFFDSLDELSQLGGSGSGECFTDPFSSGIGIPNWAAATAAGGS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02857 348 SUPERFAMILY WRKY DNA-binding domain 156 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g02857 348 MobiDBLite consensus disorder prediction 212 269 - -
Vivi6g02857 348 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g02857 348 MobiDBLite consensus disorder prediction 270 284 - -
Vivi6g02857 348 MobiDBLite consensus disorder prediction 212 299 - -
Vivi6g02857 348 MobiDBLite consensus disorder prediction 102 133 - -
Vivi6g02857 348 FunFam WRKY transcription factor 22 141 211 - -
Vivi6g02857 348 MobiDBLite consensus disorder prediction 17 37 - -
Vivi6g02857 348 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02857 348 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02857 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 317 IPR044810 GO:0003700
Vivi6g02857 348 MobiDBLite consensus disorder prediction 102 149 - -
Vivi6g02857 348 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02857 Vivi-Chr6 114608008 114609798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02857 1 347 WRKY Transcription Factor Family AT4G01250 46.779 2.76e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g02857 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02857 K13425 - gmx:100170675 340.887