LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g02857	ATGGAACAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACCGTCACTTCCACCACCAACACACCTACAACACCCTCTGTCTCCTCTTCCACCTCCTCTATTTTCCCTCTCCAACCCGAACCTTGTACCTTCTCCTCTATGTTTCCCTCCGAACAAAAACCTCAAACTTTCTCACTTTCCACACACCCTTTTGAACCAAGAACCTCCATTGAGGAATTGCATGAACTTTGCAAGCCTTTCTTTTCTAGATCAGAGCCTCTCTCTTTGCAAACCTCTCCTCTGTTTTCTTCGTTCTCTTATACTTCCTCTGTAGCTCCCAAATCACCTCAAACAACACAAGACAAACCACAACAACAACAGAAAACCAAACAATCACACCAAGGTGATTCTCTCACCAATCCAAGATCAAAAAGAAGGAAAAACCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGCCTCTCTTCAGACATATGGGCATGGAGAAAATACGGACAAAAACCCATTAAAGGGTCACCATATCCAAGGGGTTATTATAGATGTAGCAGTTCAAAAGGCTGTTTAGCGAGAAAACAAGTTGAAAGAAACAGATCAGATCCAACAATGTTCATAGTAACATATACATCTGAGCACAACCATCCTGCTCCAACTCACAAAAACTCTCTCGCTGGTTCGTCTCGGCAGAAGCCATTAACGCCACCTCAAGCTCAAGCTGAAGGTGAGACAAGCAACAAAGATGTAGCAAAAGCCTCTTCTCCTGCTACTGCTACTACTACTACTACCTCAGGAGGTGAAGAAGAAGAGGTTCAGAATCAAGGAGAAAAGTGTGAGAGCAAGGAGGATTCTTTGATGGATGATGAAGAAGGGGGAGGAGATGAGTTTGGTTTATCTGATGTTGTTTTGAGTGATGATTTCTTTGATAGTTTGGATGAACTGAGTCAACTCGGTGGTTCTGGTTCTGGAGAATGTTTTACAGATCCATTTTCTTCTGGTATAGGGATTCCTAATTGGGCTGCTGCTACGGCTGCAGGTGGTAGCTGA	1047	0.4365	MEQDWDLHAVVRGCSTVTSTTNTPTTPSVSSSTSSIFPLQPEPCTFSSMFPSEQKPQTFSLSTHPFEPRTSIEELHELCKPFFSRSEPLSLQTSPLFSSFSYTSSVAPKSPQTTQDKPQQQQKTKQSHQGDSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTSEHNHPAPTHKNSLAGSSRQKPLTPPQAQAEGETSNKDVAKASSPATATTTTTSGGEEEEVQNQGEKCESKEDSLMDDEEGGGDEFGLSDVVLSDDFFDSLDELSQLGGSGSGECFTDPFSSGIGIPNWAAATAAGGS	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g02857	348	SUPERFAMILY	WRKY DNA-binding domain	156	218	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi6g02857	348	MobiDBLite	consensus disorder prediction	212	269	-	-
	Vivi6g02857	348	Gene3D	WRKY domain	141	211	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi6g02857	348	MobiDBLite	consensus disorder prediction	270	284	-	-
	Vivi6g02857	348	MobiDBLite	consensus disorder prediction	212	299	-	-
	Vivi6g02857	348	MobiDBLite	consensus disorder prediction	102	133	-	-
	Vivi6g02857	348	FunFam	WRKY transcription factor 22	141	211	-	-
	Vivi6g02857	348	MobiDBLite	consensus disorder prediction	17	37	-	-
	Vivi6g02857	348	Pfam	WRKY DNA -binding domain	159	216	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi6g02857	348	ProSiteProfiles	WRKY domain profile.	152	218	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi6g02857	348	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	4	317	IPR044810	GO:0003700
	Vivi6g02857	348	MobiDBLite	consensus disorder prediction	102	149	-	-
	Vivi6g02857	348	SMART	WRKY_cls	157	217	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g02857	Vivi-Chr6	114608008	114609798	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g02857	1	347	WRKY Transcription Factor Family	AT4G01250	46.779	2.76e-80	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi6g02857		WRKY	2.9e-25	CL0274