Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02769 ATGAGAGATGTGACGTCGATGATGGAAGGAACAGAAGAGAGGGAGGAGAATGCTGCAGAACCGGAACCCAAAAACTCGGACGAGTCAACTCGTCCAGAAGATGACAGCGAAGACGATGAAGAACCCGACGCGGTGGCCGTGGTTGAAGAGATCCAACGAGTCATCGAATCGGTTGTTCAATTCGGTGAATATCGAAGAATACAAAGGAAGGAATCGCACAATCTCGCTCGTCGTTTCAAACACATGTTGCCGCTTATGGAAGACCTTCGTGACCTTCATCAACCTGTTCCTCAGAACGGCGTTGCTTGGTTGAAGAGCCTTAGGGATGCGCTTTTGTTCGCTAAGGATTTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTCGCATTGGAGGGTGAGGCTGTTATGAGCAAATTTCAGAAGGTTTATAAAAAATTAAGCCGAGCTTTTAAAGGTGTGCCTTTTGAAGAATTAGGAATCTCCGATGAAGTGAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGCGGGCAAGGAGAAGGACTGATACACAAGACATAGAGTTAGCAATGGATATGATGGTTGTGTTCTCCGACGAAGATGATCGTAATGCCGATAGTGCTATAATCGAAAGGCTTGCGAAAAAGTTGGAACTTCACAGTGTTGAGGATCTTGAGGTAGAAACAGCGGCTGTTGGATACCTTGCTAGAGAAAGAAAGGGACAACAAGAAGAGAGCACACAGAAAATAATTGGCCTTCTTAACAAATTCAAAAGGATTGCAGGTATGGAAGAAACCAGTGTTGTTCTTGATAATGATCCTGCCATGCCTAACAAGATGTTTGAAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATAACACTCGAAATCATGACCGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAATTCCAATCACATCTCTTGCCCTAAGACAAGGCAACCACTGGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAGAACTTAATTGCTGAATGGTGTGAGAACCACAACTTCAAACTTCCGAAAATCTGCACTTCATGTCAAGAAACATCTTCCACCGACAACCAAGAAGCAATTCCATCTTTGGTTGAAAGCCTATGGTCAATCAACTTAGAACATCAAAGAAAGGCGGTCGAGAGAATACGCATGTTATCGAAAGAAAATTCAGAGAACAGAATTTTAGTTGCCGAGCACGGAGGAATACCGCCATTAGTACAATTACTATCCTATCCAGATTCAAAAATAAAGGAACATGCTGTTACAGCAATTTTAAATCTATCAATTGATGAAGGTAACAAAAAGCTCATATCCAAAGAAGGTGCTATTCCAGCCATAATAGAAGTTCTAGAAAGTGGAAGTATTGTAGCTAAAGAAAACTCCGCCGCAGCTTTATTTAGCTTATCAATGATTGATGAAAACAAAGAGGTGGTTGGAATGTCAGATGGGATTCAACCTTTGGTAAATTTACTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCAGCTACAGCACTTTTTAGCTTATCATTAAACCATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTGACACCTTTACTTGGATTGTTAAGGGACAAAAACTTGGGAATGGTTGATGAAGCACTATCTATTATATTACTACTTGTGTTGAATTATGAAGGGAGACAAGAGATTGGACAGTTACCTTTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTACAAGTAATTCTTCTTTTACATTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTAGTTGAGATTAAAGAAAGTGGTACAAATAGAGCACAGAGGAAAGCTAATGCAATTTTAGAACTCATAAGCAAGAGTGAGCAAATTTAA 1989 0.4042 MRDVTSMMEGTEEREENAAEPEPKNSDESTRPEDDSEDDEEPDAVAVVEEIQRVIESVVQFGEYRRIQRKESHNLARRFKHMLPLMEDLRDLHQPVPQNGVAWLKSLRDALLFAKDLLKLCSQGSKIHLALEGEAVMSKFQKVYKKLSRAFKGVPFEELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLEVETAAVGYLARERKGQQEESTQKIIGLLNKFKRIAGMEETSVVLDNDPAMPNKMFERSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFNSNHISCPKTRQPLEHLQLAPNCALKNLIAEWCENHNFKLPKICTSCQETSSTDNQEAIPSLVESLWSINLEHQRKAVERIRMLSKENSENRILVAEHGGIPPLVQLLSYPDSKIKEHAVTAILNLSIDEGNKKLISKEGAIPAIIEVLESGSIVAKENSAAALFSLSMIDENKEVVGMSDGIQPLVNLLQNGTVRGKKDAATALFSLSLNHANKDRAIRAGIVTPLLGLLRDKNLGMVDEALSIILLLVLNYEGRQEIGQLPFIETLVEFTREGTPKNKECAASVLLELCTSNSSFTLAALQFGVYEHLVEIKESGTNRAQRKANAILELISKSEQI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02769 662 Gene3D - 365 661 IPR011989 -
Vivi6g02769 662 Coils Coil 162 182 - -
Vivi6g02769 662 PANTHER U BOX DOMAIN-CONTAINING 69 656 - -
Vivi6g02769 662 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Vivi6g02769 662 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Vivi6g02769 662 FunFam RING-type E3 ubiquitin transferase 367 662 - -
Vivi6g02769 662 FunFam RING-type E3 ubiquitin transferase 44 157 - -
Vivi6g02769 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 505 547 IPR000225 GO:0005515
Vivi6g02769 662 SMART arm_5 453 493 IPR000225 GO:0005515
Vivi6g02769 662 SMART arm_5 412 452 IPR000225 GO:0005515
Vivi6g02769 662 SMART arm_5 535 575 IPR000225 GO:0005515
Vivi6g02769 662 SMART arm_5 494 534 IPR000225 GO:0005515
Vivi6g02769 662 SMART arm_5 576 616 IPR000225 GO:0005515
Vivi6g02769 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 364 IPR013083 -
Vivi6g02769 662 Pfam Armadillo/beta-catenin-like repeat 495 533 IPR000225 GO:0005515
Vivi6g02769 662 Pfam Armadillo/beta-catenin-like repeat 412 451 IPR000225 GO:0005515
Vivi6g02769 662 SUPERFAMILY RING/U-box 288 366 - -
Vivi6g02769 662 CDD RING-Ubox_PUB 291 343 IPR045210 -
Vivi6g02769 662 FunFam RING-type E3 ubiquitin transferase 286 363 - -
Vivi6g02769 662 MobiDBLite consensus disorder prediction 1 31 - -
Vivi6g02769 662 Gene3D - 43 157 IPR036537 GO:0007166
Vivi6g02769 662 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Vivi6g02769 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Vivi6g02769 662 MobiDBLite consensus disorder prediction 1 43 - -
Vivi6g02769 662 SUPERFAMILY ARM repeat 379 657 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02769 Vivi-Chr6 113045912 113049098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02769 46 662 U-box Gene Family AT5G42340 60.940 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02769 - - psat:127127055 1150.19