Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02758 ATGCAAGAAGATTGGAAGCCAAAAGTAGGCATGGTTTTTGATAACATGAATGATGCTTGGAAATTTTGGATTGATTATGGTGGGAGAGTAGGGTTTGGAGTGAGAAAACAATACATACATAAAAGTAGAGACGGTTCAAGTACTTCTTGCAGGTTTGTTTGTTGCAAAGAAGGTTTACGAAAACCAGACAAACGAGATTATAAAACAATCAAGCCAAGAGCTGAGACTAGAACAAACTGTCAAGCAAGGATAGGACTTAAAAACACGGGTGAAGTTTGGATAGTGCGTGATTTTGTGGAGGAACACAACCATATTTTCCACTTGAAAGAAACAACGCATATGTTGTCATCTCAACGAAAAGTTTCAGAAATTCAATGTCAACAAATTGAATTAGCAGATGATGCTGGTCTTCAACAAAGAAATTCATTTGATTTGATGAGTAAGGAAGTGGGAGGTAGAACCAACTTGGGATTTACACGTCTTGATCAAAAGAATCACCTCCGAAATAGAAGGCAAAGAAGTTTGGTACATGGGGAAGCCGGCTATCTGTTACAATACTTTCAGAAGATGTCGATTGAAAATCCATCTTTCTATCATGCTTATCAAATGGATATGGAAGATCAAATTACTAATGTCTTTTGGGCATATGCAAGAATGCTCATTGATTACGGATATTTTGGTGACGTAATTTCTCTTGATTCAACATATTGTACAAATAGTTCTCGTAGACCACTAGCGGTGTTTTCGGGTTTTAACCACCATCGAAAAGCGGTTATCTTTGGGGCTGCCCTATTGTATGATGAAACAACAGAGTCATATAACTGGCTCTTTGAAACATTTTTAGAGGCACACAAGCAAAAGAAGCCTCAAACCGTTTTTACTGATCAAGATCATGCAATGGCAAAAGCACTTATTGAAGTTATCCCTGATACATATCATGGCCTATGTACGTGGCACTTGATGCAAAATGGTATCAAACATTTAGGCAATTTAATGAAAGGTGGATCTCATTTTCTTAGTGACTTTAAAAAGTGCATGTATGAATATAACGATGAAAAACAATTCGAAGAATGTTGGAGAAACCTCCTTATAAACTACAAGGTTGAGGAAAATACTTGGTTGAGAAGAGTTTACAATGTGAAAGAGAAATGGGCTTCTTGTTACATGAATAAGGCTTTTACATTAGGAATGCGAAGCACCCAACTTAGTGAAAGTGTGAATGCAAATATTAAAAGCATTATGAATGTGAATTTGGATATTATCAAGTTTTTTAAGTGTTTTGAGGATGTTATTGAAGAAAAAAGATATAATGAATCAAAGTGTGAATACGAGGCACGTCAAAAGATACCAAGACTCCGAAACTCATTTTCTGATGTATTACGACAAATGTCTGAGCTTTATACTCCCGCTATTTTTGATCTATTCCAAAATGAATATGAGTTGTTTGAAGCATGTTCTATCAAGAGTTTCAACATACAAACATCAAAGATTGATTGTGTTATTTCCATGGCAAGAGATTTTGGAGAGTGGCAAGTGTTCTTTGATATTGATAAGAACTCAATTAATTGCTCTTGTCGCAAGTTTGAGAGCTTTGGCATACTATGTTGTCATTGCTTAAGAGTATTTATTCATATAGGTGTGAAATCGGTGCCTGATGGTGTTACACCTGAACCTTATATCTTGAAGAGGTGGACAAAATCAGCAAGAAGCGGTGTTTCACCTAATGTTGAAGATGCTGATGTTAGTCATGATGTGGAGGATGCTGATTTTAGTCATGATGTTGAAGATATTGATTTTTCTCCAAAGCAATGCTACAAGGAAATTTGTCCTCGCCTTATTAGGATTGCCACTGAAGCATGTAGAAGTCCAGAAACATTCACTTTTATTACCAAAGTTGTTGATGAGTTGGATAAGTGCATACTAAAGTTTCAAAATTGTGAAGTAAGTGGTGCACAAGTGAATATGTTTCTTAGCAAAGTTAAAGAGATTGAAAGTAATATTGATAATTCAACACATGTCAATGGCTTCAAAAAAAGACAAGGCGGAAAGGGTTCAAAACGTAAGAAAGGTTGGGTCGAAACTAAACTTACCAATAGGAAGAAAAATGGTGGTCCAAGTACATCTCAGATCAAGTTCAATACTGAGACATTAAAGATTGTTGAAAGTAGGAAAAGTGAAAATTTAGGTGGTTCGCAAAGACAAACGCAATATGAGGTGGTCGATATGAACGCACATATTTGGCTCAATGATGCATACAACAACATGAAAAAGAATGAAACTTTAAGTTCATTTGGTGACACAAGTTTTACTAGCTTATTGATGGAAAACAATCAAGAATATACAAGTGGAAGAGAAGGAAAAGTGGAAGAGAACTAG 2376 0.3577 MQEDWKPKVGMVFDNMNDAWKFWIDYGGRVGFGVRKQYIHKSRDGSSTSCRFVCCKEGLRKPDKRDYKTIKPRAETRTNCQARIGLKNTGEVWIVRDFVEEHNHIFHLKETTHMLSSQRKVSEIQCQQIELADDAGLQQRNSFDLMSKEVGGRTNLGFTRLDQKNHLRNRRQRSLVHGEAGYLLQYFQKMSIENPSFYHAYQMDMEDQITNVFWAYARMLIDYGYFGDVISLDSTYCTNSSRRPLAVFSGFNHHRKAVIFGAALLYDETTESYNWLFETFLEAHKQKKPQTVFTDQDHAMAKALIEVIPDTYHGLCTWHLMQNGIKHLGNLMKGGSHFLSDFKKCMYEYNDEKQFEECWRNLLINYKVEENTWLRRVYNVKEKWASCYMNKAFTLGMRSTQLSESVNANIKSIMNVNLDIIKFFKCFEDVIEEKRYNESKCEYEARQKIPRLRNSFSDVLRQMSELYTPAIFDLFQNEYELFEACSIKSFNIQTSKIDCVISMARDFGEWQVFFDIDKNSINCSCRKFESFGILCCHCLRVFIHIGVKSVPDGVTPEPYILKRWTKSARSGVSPNVEDADVSHDVEDADFSHDVEDIDFSPKQCYKEICPRLIRIATEACRSPETFTFITKVVDELDKCILKFQNCEVSGAQVNMFLSKVKEIESNIDNSTHVNGFKKRQGGKGSKRKKGWVETKLTNRKKNGGPSTSQIKFNTETLKIVESRKSENLGGSQRQTQYEVVDMNAHIWLNDAYNNMKKNETLSSFGDTSFTSLLMENNQEYTSGREGKVEEN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02758 791 SMART 26again6 521 548 IPR006564 GO:0008270
Vivi6g02758 791 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 638 IPR031052 GO:0006355
Vivi6g02758 791 Pfam SWIM zinc finger 512 545 IPR007527 GO:0008270
Vivi6g02758 791 ProSiteProfiles Zinc finger SWIM-type profile. 510 546 IPR007527 GO:0008270
Vivi6g02758 791 Pfam FAR1 DNA-binding domain 21 105 IPR004330 -
Vivi6g02758 791 Pfam MULE transposase domain 229 323 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02758 Vivi-Chr6 112928272 112939167 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi6g02758 MULE 5.3e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02758 - - mtr:112419426 1053.51