Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02757 ATGGGATTCCCCATAGGCTACCCTGAACTCTCCGTTCCCAATTTCTTCCTTTACATTCTCTCTCTCCTCGCCTTCCTAAGATCCCTAGTCACCTCCTTCCTCTCTCTCCTCCACCTCTCCGACCTGCTCGATACCGATTTCTCTACCGCCACCGTAACAGAATCAAACTCCCACCGTCCTACCCTCTCCGCAATCCTCATCCGCGATTTCCTCCCTGTCGTCAGCTTCCGTGAACTCGCCGGAGATTCGAAAACAGTAGAGTGTGCGGTGTGTCTGGATGAATTTTCCGGCGAGGAAGAGATCAGGTGTATGACAAATTGTAAACATATTTTTCACCGGACGTGTGTGGACCGTTGGATTGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCACTTTGTACCTTGTGATAAAATGGAAGATTATAATCAACGGTTATGGAAGGCTTGTGAATCTGAATGTGTAGATGATGATGTTTCTCTTTTTTCTCAACATGATGACGATCACTACATTGCTTCACTTTGA 528 0.4697 MGFPIGYPELSVPNFFLYILSLLAFLRSLVTSFLSLLHLSDLLDTDFSTATVTESNSHRPTLSAILIRDFLPVVSFRELAGDSKTVECAVCLDEFSGEEEIRCMTNCKHIFHRTCVDRWIDHDQKTCPLCRTHFVPCDKMEDYNQRLWKACESECVDDDVSLFSQHDDDHYIASL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02757 175 SMART ring_2 88 130 IPR001841 -
Vivi6g02757 175 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Vivi6g02757 175 Pfam Ring finger domain 87 131 IPR001841 -
Vivi6g02757 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 138 IPR013083 -
Vivi6g02757 175 PANTHER RING ZINC FINGER PROTEIN-RELATED 34 166 - -
Vivi6g02757 175 SUPERFAMILY RING/U-box 70 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02757 Vivi-Chr6 112926728 112927640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02757 1 161 C3H Transcription Factor Family AT1G63840 40.719 2.57e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02757 K16281 - gmx:100813224 203.756