Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02754 ATGGGATTCCCGATAAGATACTCTGAACTTTCCGTTCCCAAACTCTTCCTTCACCTTCTCTCTCTCCTCGCCTTCCTAAGATCACTAGCCCTTTCCTTCCTCTCTCTCCTCCACCTCTCCGACATCTCCACCGCCACCTCATCAGAATCAAACTCCGACCATCCCACCCTCTCCGCAACCCTCATCCGAGAATTCCTCCCCGTCATCAGCTACCGTGACCTTGCCGAAGATTCGAAAACAGTAGAGTGTGCGGTGTGTCTGAACGAATTTGCCGGCGAGGAAGAGATCAGGTGTATGACGAATTGTAAACATATTTTTCACAAGAGATGTGTGGACAGTTGGATTGATCATGATCAGAAGACGTGTCCGCTTTGTAGGACCCAATTTGTACCTTATAAGAAAATGGAAGATTATAATCAACGGTTATGGAAAGCTTGTGAATCTGAATCTGAATGTGAATATGATGATGATTATGCTCTTTTTTCTCATCATGATGATGATCCCCTCATTGCTTCACTTTGA 522 0.4521 MGFPIRYSELSVPKLFLHLLSLLAFLRSLALSFLSLLHLSDISTATSSESNSDHPTLSATLIREFLPVISYRDLAEDSKTVECAVCLNEFAGEEEIRCMTNCKHIFHKRCVDSWIDHDQKTCPLCRTQFVPYKKMEDYNQRLWKACESESECEYDDDYALFSHHDDDPLIASL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02754 173 SUPERFAMILY RING/U-box 82 139 - -
Vivi6g02754 173 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Vivi6g02754 173 SMART ring_2 83 125 IPR001841 -
Vivi6g02754 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Vivi6g02754 173 Pfam Ring finger domain 82 126 IPR001841 -
Vivi6g02754 173 PANTHER - 19 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02754 Vivi-Chr6 112820258 112821114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02754 1 150 C3H Transcription Factor Family AT1G63840 41.772 1.29e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02754 K16281 - gmx:100813224 169.474