LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g02701	ATGAGTTTTTTGGCTTGTGAGGCCACTCAAATTGGTAATGAATACATTGTATACATGGGCTCACTTCCTAAAGAAGAATCATATTCTCCAACCTCTCATCATTTGAACATGTTGCAACAAGTCTTTGATGGGGGTGACATAAAAAATCTCTTAATTAGAAGTTATAAGAGAAGTTTCAATGGTTTTGCTGCAATACTCAATGATCAACAAAGAGAAAAACTTCTTAACATGAAAGGTGTCGTCTCGGTGTTTCCAAATCAAAACTTTTACCTACAAACGACACGATCGTGGAATTTTCTTGGATTTCCTCAAAAAATCAAAAGAGATCCGATTATTGAGAGTGACTTAATAGTTGGAGTCATTGATAGTGGAATATGGCCAGAATCTGAAAGTTTTAACGACAAAGGTCTTGGTCCAATTCCAAAAAAGTGGAAGGGAGTTTGTAAAGGTGGTTCTAACTTCACTTGCAATAACAAACTCATTGGAGCACGATCTTATGGTGATGGGGATAGTGTAAGAGACGAGGTTGGTCATGGAACTCACACAGCATCAACTGCAGCGGGAAGAGAGGTGCAGGGTGTGAGTTTTTTTGATCTTGCAAAAGGAACCGTAAGAGGTGGAGTCCCATCTTCAAGGATTGCAATGTATAAATTATGTGGTGCAAATGGTAAATGTGGTGGTTCTAGTATATTAGGTGCATTTGATGATGCCATTGCTGATGGTGTTGATATCATCTCACTCTCAGTTGGGGGTCGAGATGCACTAGATTTTTTGGATGATGCTATTGCCATTGGTTCTTTTCATGCCATGGAGAATGGAATACTCACATCACATTCTGCAGGAAATAGTGGTCCTGGCGTAAGTACTACTATGAGTGTAGCACCTTGGTTATTTAGTGTTGCAGCAACTACCATAGATCGTAAATTCATTAGTAAGCTTATTCTTGGAAATGGAAAGACTCTAATTGGTAGTTCAGTTAACACTTTCCCCTCAAATGGCACAAAAGTTCCAATAACTAAGGGTACTTGCTCAAATGGCTTAAATAAGACATTGGCGGAAGGTAAGATTGTTTTGTGTGAATCACGAGGGTTTGAAGATTTAGTTTTTCAAAGTGGTGCATATGGTATAGTCTCAAATGTTGAAGAGTCTCTAAATGATGTGGCTTTTGTCTCTGAGATGCCTTCAACTAACTTGAATTCGAAAGACTTTGATCTTGTTCAATCTTACACAGAATCCACTAGATCCCCTGAAGCTGAAATTTTGAAGAGCGAGATCTTACATGATACAACTGCTCCTAGAGTTGTTTCTTTCTCTTCTCGTGGTCCAAATTCAGTGGTTCCAGTTATTATGAAACCAGATATAAGTGCCCCGGGAGTGGATATCTTGGCTGCATATTCACCTCTAGCCCCTCCATCTTCTGGTTTTGGTGACACGAGAAAGGTTGGTTATAACATAGATTCTGGAACCTCTATGGCATGTCCCCACATTTCCGCAATCGCTGCATATGTGAAATCATTTCATCCAAATTGGTCACCTGCGGCTATAAAATCTGCTATCATGACCACAGCAAAACCTGTGAATGGAACTTATAATGATTTGGCTGGGGAGTTTTCTTATGGATCAGGGAATGTCAATCCGCGACTAGCTGTTAACCCAGGACTTATTTATAACATCACTAAAGACGACTATGTGCAAATGCTTTGCAATTATGGTTATGATGATGAAAAAATTAAACAAGTTAGTGGCGATAACTCAAGTTGTCGTGGAACTTCTAACCCATTGTTAGTAAAAGATCTAAATTATCCTGCACTAGTGATTCATGTTGCGCCTCAAAAACCTTTCAATATCAAGTTTCCTAGAACAGTTACAAATGTTGGCTCTCCTAATGCAACCTACAAAGCTATTGTCACTCCTATTCCAAATGTCAAGATTACAGTGGAACCAAATTTTCTTTCATTCAAATCATTAGAAAAGACACAATCATTTGTCGTCACAGCTGTTGGGACTGTAGGACAAAGTCAAACCCTGTTTTCATCGTCACTTGTTTGGTCAGATGGCATCCACAATGTCAAGAGTCCAATCATCGTACACTTAACATCGTAA	2103	0.3904	MSFLACEATQIGNEYIVYMGSLPKEESYSPTSHHLNMLQQVFDGGDIKNLLIRSYKRSFNGFAAILNDQQREKLLNMKGVVSVFPNQNFYLQTTRSWNFLGFPQKIKRDPIIESDLIVGVIDSGIWPESESFNDKGLGPIPKKWKGVCKGGSNFTCNNKLIGARSYGDGDSVRDEVGHGTHTASTAAGREVQGVSFFDLAKGTVRGGVPSSRIAMYKLCGANGKCGGSSILGAFDDAIADGVDIISLSVGGRDALDFLDDAIAIGSFHAMENGILTSHSAGNSGPGVSTTMSVAPWLFSVAATTIDRKFISKLILGNGKTLIGSSVNTFPSNGTKVPITKGTCSNGLNKTLAEGKIVLCESRGFEDLVFQSGAYGIVSNVEESLNDVAFVSEMPSTNLNSKDFDLVQSYTESTRSPEAEILKSEILHDTTAPRVVSFSSRGPNSVVPVIMKPDISAPGVDILAAYSPLAPPSSGFGDTRKVGYNIDSGTSMACPHISAIAAYVKSFHPNWSPAAIKSAIMTTAKPVNGTYNDLAGEFSYGSGNVNPRLAVNPGLIYNITKDDYVQMLCNYGYDDEKIKQVSGDNSSCRGTSNPLLVKDLNYPALVIHVAPQKPFNIKFPRTVTNVGSPNATYKAIVTPIPNVKITVEPNFLSFKSLEKTQSFVVTAVGTVGQSQTLFSSSLVWSDGIHNVKSPIIVHLTS	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g02701	700	ProSiteProfiles	Serine proteases, subtilase domain profile.	96	550	-	-
	Vivi6g02701	700	Gene3D	-	567	698	-	-
	Vivi6g02701	700	Pfam	Peptidase inhibitor I9	15	91	IPR010259	-
	Vivi6g02701	700	Pfam	Subtilase family	114	541	IPR000209	GO:0006508\|GO:0008236
	Vivi6g02701	700	SUPERFAMILY	Subtilisin-like	95	551	IPR036852	GO:0004252\|GO:0006508
	Vivi6g02701	700	Gene3D	Peptidase S8/S53 domain	115	563	IPR036852	GO:0004252\|GO:0006508
	Vivi6g02701	700	PRINTS	Subtilisin serine protease family (S8) signature	113	132	IPR015500	-
	Vivi6g02701	700	PRINTS	Subtilisin serine protease family (S8) signature	487	503	IPR015500	-
	Vivi6g02701	700	PRINTS	Subtilisin serine protease family (S8) signature	174	187	IPR015500	-
	Vivi6g02701	700	Pfam	Fibronectin type-III domain	598	696	IPR041469	-
	Vivi6g02701	700	CDD	PA_subtilisin_like	313	420	-	-
	Vivi6g02701	700	Gene3D	-	306	427	-	-
	Vivi6g02701	700	ProSitePatterns	Serine proteases, subtilase family, serine active site.	488	498	IPR023828	-
	Vivi6g02701	700	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	5	91	IPR037045	-
	Vivi6g02701	700	CDD	Peptidases_S8_3	89	523	IPR034197	-
	Vivi6g02701	700	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	15	696	IPR045051	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g02701	Vivi-Chr6	111525120	111527355	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g02701	10	699	Subtilisin-like Serine Gene Family	AT3G46840	52.514	0.0	719

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g02701	-		-	psat:127076787	1073.92