Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02697 ATGGATCACGCGGACCATATGGCGTCTTACTATATGCAGCAGAGAGGACTTGCTGGTTCTGGAGCACAACCCGAGTTACATGTTTCATCGAGTTTTAATCATCTGTCTAATCCCAATCTACAATTTCAATCCAGCATTGGTGGTGGTGGTAGTAACATTGGATCCACATTACCTTTAGAATCTTCGGCAATTTCATCTCAAGGCGTCAATGTGAGTGGTCCTACCGGGGTACAGTCCGGGGAAACTGTAAAAAGGAAGAGAGGAAGGCCGAGAAAATATGGTGCTGATAGAGTTGTGTCATTGGCTCTTAGTCCAAGTCCAACACCGTCTAGTAATACTGGAACCGTGACGCAAGATGGCCCGAAACGAGGGAGAGGGCGTCCACTTGGGAGTGGGAAGAAACAGCAATTGGCTTCTTCTGGTGAGTCGATGCACGGTTCAAATTGGACGACATTCACTCCTTTGACGATCAACATTGCAAGTGGAGAAGATATTGCACCAAAAATCATGGAATTTTCTCAGGAGCGGGCTACTGCTGTATGTGTTATTTCATGTCATGGCAGGGTCTCGAGCGTGACCCTTCGTCAGCCTTCAACTCAAGGTGGCACTATCACACATGAGGGAAATTTCGACATTTTGTGCATGTCTGGCTCTTACTTGCCTACTGAGACTGGCAGCTTAATGGACCGAACTGGTGGAATAAGTGTTATGCTTAGTAATTCTGATGGCAGTCTCTTTGGTGGAAGAGTTGCTGGAGTGATTGCTGCTGCTGGGCCTGTCCAGGTGATGGTTGGGACCTTTCTCATTGGAAGATTGAAGGTAAGGAACAACAAGAGAAAGGAACGCTCAAATGATGCAGAACTGGCTGCTGAATCCTCTCAGCAAGGAGCTCGCAATCCTGGTGCACCGAACAACATTTCATCTAGTCAGAATCTGACTCCAACCTCATCCTTAAGCCCTTGGTCGTCAGCAGCAGCAGCATCGCGTCCAATGGAGATGCGTGATTCCAATGCTGACATTGATTTAATGCGCGGTTGA 1038 0.4759 MDHADHMASYYMQQRGLAGSGAQPELHVSSSFNHLSNPNLQFQSSIGGGGSNIGSTLPLESSAISSQGVNVSGPTGVQSGETVKRKRGRPRKYGADRVVSLALSPSPTPSSNTGTVTQDGPKRGRGRPLGSGKKQQLASSGESMHGSNWTTFTPLTINIASGEDIAPKIMEFSQERATAVCVISCHGRVSSVTLRQPSTQGGTITHEGNFDILCMSGSYLPTETGSLMDRTGGISVMLSNSDGSLFGGRVAGVIAAAGPVQVMVGTFLIGRLKVRNNKRKERSNDAELAAESSQQGARNPGAPNNISSSQNLTPTSSLSPWSSAAAASRPMEMRDSNADIDLMRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02697 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 317 IPR039605 GO:0003680
Vivi6g02697 345 MobiDBLite consensus disorder prediction 103 119 - -
Vivi6g02697 345 CDD DUF296 153 267 IPR005175 -
Vivi6g02697 345 MobiDBLite consensus disorder prediction 288 324 - -
Vivi6g02697 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Vivi6g02697 345 Gene3D - 155 287 - -
Vivi6g02697 345 ProSiteProfiles PPC domain profile profile. 149 291 IPR005175 -
Vivi6g02697 345 MobiDBLite consensus disorder prediction 278 345 - -
Vivi6g02697 345 MobiDBLite consensus disorder prediction 64 79 - -
Vivi6g02697 345 MobiDBLite consensus disorder prediction 64 149 - -
Vivi6g02697 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 268 - -
Vivi6g02697 345 MobiDBLite consensus disorder prediction 133 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02697 Vivi-Chr6 111443690 111451152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02697 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 40.327 2.65e-58 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02697 - - gmx:100814615 367.466