Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02687 ATGAACAATAGAGCGAGGTACCCACTTGGGAACAACGGGTTAGGACGAGGTGGAGGTGGTGGAGGGTTTCAACAGAGACCAAATCAACAACAGTATGTGCAGAGGCACATGATGCAAAATCAGCATCCACAGCAACAATACCAGCAGAATCAACAGAATCAACAATATCAGCAACAGCAGCAACAACAACAGTGGCTGAGAAGGAACCAGTTGAGTGGTACTGATACCAGTGTTGTGGAGGAAGTTGAGAAGACTGTACAGTCTGAAACAAATGACTCTAGTTCACAAGATTGGAAGGCAAGCCTAAAGCTTCCACCAGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCAATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAACGGAACAGGCAAAACTGCTGCATTTTGCGTTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTATGTAAAGAGCTTGCAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGCGGTACAAGCCTGAAAGATGACATTATGCGTCTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATTTTGGATCTTGCAAGGAAGGGTGTCTGCGTTCTAAAAGATTGTTCTATGCTCGTCATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAGCCTTCGATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTTATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGATATCTTTGTAAGCCGTATATCATTAATCTTATGGACGAGCTAACTCTGAAGGGTATCACCCAATTTTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCAGTCAACAGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATTCATGCTAAGATGTTGCAAGACCATCGTAATAGAGTTTTTCACGACTTTCGTAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTAAATGTTGTTATCAATTTTGATTTTCCCAAGAACTCAGAGACATATCTGCACAGGGTTGGTCGATCAGGGAGGTTCGGACACCTTGGTTTAGCAGTGAACTTAATAACCTATGAGGATCGTTTCAATTTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCTCCATTCATTGATCAGGCCATATATTGTCGGTGA 1491 0.4118 MNNRARYPLGNNGLGRGGGGGGFQQRPNQQQYVQRHMMQNQHPQQQYQQNQQNQQYQQQQQQQQWLRRNQLSGTDTSVVEEVEKTVQSETNDSSSQDWKASLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELAKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLARKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLCKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02687 496 MobiDBLite consensus disorder prediction 81 102 - -
Vivi6g02687 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 476 IPR027417 -
Vivi6g02687 496 MobiDBLite consensus disorder prediction 23 55 - -
Vivi6g02687 496 MobiDBLite consensus disorder prediction 81 100 - -
Vivi6g02687 496 FunFam ATP-dependent RNA helicase DDX6 327 496 - -
Vivi6g02687 496 CDD DEADc_DDX6 124 324 - -
Vivi6g02687 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 323 IPR014001 -
Vivi6g02687 496 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 57 495 - -
Vivi6g02687 496 Pfam DEAD/DEAH box helicase 147 311 IPR011545 GO:0003676|GO:0005524
Vivi6g02687 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Vivi6g02687 496 SMART ultradead3 141 337 IPR014001 -
Vivi6g02687 496 Pfam Helicase conserved C-terminal domain 348 454 IPR001650 -
Vivi6g02687 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 493 IPR001650 -
Vivi6g02687 496 SMART helicmild6 373 454 IPR001650 -
Vivi6g02687 496 MobiDBLite consensus disorder prediction 1 55 - -
Vivi6g02687 496 FunFam ATP-dependent RNA helicase DDX6 103 326 - -
Vivi6g02687 496 Gene3D - 79 326 IPR027417 -
Vivi6g02687 496 CDD SF2_C_DEAD 334 463 - -
Vivi6g02687 496 Gene3D - 327 495 IPR027417 -
Vivi6g02687 496 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02687 Vivi-Chr6 111354152 111359235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02687 124 486 Eukaryotic Initiation Factors Gene Family AT3G19760 38.356 2.69e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02687 K12614 - qsa:O6P43_027218 843.958