Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02685 ATGGGAAGGTCACCTTGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAGGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTGTCTCCCTAAGATCACAGGACTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTGAGACCCGACATTAAACGCGGACCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAACTTCATGCCATTCTAGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCAGGAAGAACTGACAACGAGATAAAGAACTTTTGGAACACGCATTTGAAGAAGCGTCTCAAAAGCATGGGGATTGATCCAAAAACACACGAGCCAGTAGCCTCGTCAACTAGTTACCCAAATCACAAGTCACACGCATCGATTTTGACACGTCACATGGCTCAATGGGAGAGTGCAAGGCTCGAAGCAGAAGCCAGACTCTCAACTGAATCATCACACTTCAACAACAGCAGCAGCAACAACAACAACAACAATCATAATTCCTCTGAAAAAACTGATTCTTCTCATGACTACTTTCTCCGAATATGGAACTCTGAAGTTGGAGATGCATTTCGCAATGTTCAAAAACCAGACACCGATCATGATACCAAAACGAGCCGCTGTCAGAGTCCTATTTCTGCTGTCACAGCATGCAGCAGTGTGAAAGAAGAACCGGAGTGGAAAAACGAAAAGTTTTGCGCTGAAAATGTGATTCTTGAATCTGATTCAACAAGCTCTAATGACTTGGAAGATTCATCGGACACTGCTTTGCAGCTCTTGTTCGATTTTCCTATGAACAACGATATGAGCTTCTTAGAAAACTATTTTAATTAA 885 0.4282 MGRSPCCDKKGLKKGPWTAEEDEILANYINKNGGHGSWRCLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGIDPKTHEPVASSTSYPNHKSHASILTRHMAQWESARLEAEARLSTESSHFNNSSSNNNNNNHNSSEKTDSSHDYFLRIWNSEVGDAFRNVQKPDTDHDTKTSRCQSPISAVTACSSVKEEPEWKNEKFCAENVILESDSTSSNDLEDSSDTALQLLFDFPMNNDMSFLENYFN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02685 294 FunFam Transcription factor RAX3 7 68 - -
Vivi6g02685 294 SMART sant 67 115 IPR001005 -
Vivi6g02685 294 SMART sant 13 64 IPR001005 -
Vivi6g02685 294 MobiDBLite consensus disorder prediction 157 190 - -
Vivi6g02685 294 FunFam MYB transcription factor 70 117 - -
Vivi6g02685 294 MobiDBLite consensus disorder prediction 165 186 - -
Vivi6g02685 294 MobiDBLite consensus disorder prediction 121 142 - -
Vivi6g02685 294 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi6g02685 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi6g02685 294 MobiDBLite consensus disorder prediction 128 142 - -
Vivi6g02685 294 CDD SANT 16 62 IPR001005 -
Vivi6g02685 294 Gene3D - 11 68 - -
Vivi6g02685 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vivi6g02685 294 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi6g02685 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Vivi6g02685 294 CDD SANT 70 113 IPR001005 -
Vivi6g02685 294 Gene3D - 70 143 - -
Vivi6g02685 294 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi6g02685 294 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vivi6g02685 294 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02685 Vivi-Chr6 111346038 111348108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02685 1 290 MYB Transcription Factor Family AT3G61250 63.514 1.06e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g02685 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02685 K09422 - gmx:100816569 409.068