Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02637 ATGGGTGTTGGTGGTAATTTCTGGGATTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGATCTTTCCTTCTGGATTGTTCAGCATAACAATGCTGTTAAAACGCATGTCAAGAAGCCTCACCTGAGGCTCACTTTCTTCCGTACGATTAATCTCTTTTCAAAGTTTGGAGCATTTCCTGTGTTTGTTGTTGATGGGACTCCATCGCCATTGAAATCAAAGGCCAGGAGTGCTAGATTTTTCCGTTCTTCTGGAATTGAATCGACTAGCTTGCCAGTTTCTGAAGGTGTTTCAGCTGAGAGGAACCGTTCATTTTCAATATGTGTTCAAGAGTGTGTGGAACTTGCCGAGCTACTTGGGATTCCTGTACTAAAAGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTAGATGCGTGCATCACATCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCGTGATAAAATCTTTCTCTCCCAATTCCAAAGAACCGTTTGAATGCTACAATGTGTCAGAGATTGAGGCCGGGCTTGGATTGAAGAGGAGACACCTAATAGCTATCGCTCTTTTGGTTGGGAATGATCATGATATGAATGGTGTTCAAGGGATTGGACTTGATGGTGCTCTTCGTTTTGTTCAAGCTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAGTTCCTATCGACATTAAATCTGACGACAATATGGATATTGATGGGAACTCCCCAAATTCAAAACAACCTCACTGCTCATTCTGTGGTCATCCAGGCAACAAAAGAGATCATACAAAGTCTTCATGTGAATTTTGTGTCACAAATGACAGTGAAGGTTGCTTGAAAAAGCCCGAAGGTTTTAAATGTGATTGTAACTCTTGTGGTATGAATAGGAAAAATAAGGAGCAGAAAAAGATTGAAAATTGGCACACAAAAATTTGTGACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGCTATGTATTTATGCAATGACAATGGTTACTTTTCCGCAATTGACGGCCCTAAGATCTCATGGGAAAGACCGAAAATTGAGCTTTTGATACATTTTTTGAACTTCCATCAGAACTGGGATCCGTCGTACATTCGACGGATAATGTTTCCTATGATGTCCACCATCTTCTTGAGAGAAATGGCTACAACTACTACTACTACTACAGATAGTTTGTTGTTTGGACAGTTTGAGTTTAATTCTGTAAAACGTGTGAAGACGAGATACGGATATCAGATTTATGTCGTCAAGTGGAAACGCGCGATGGGTAGCATTGCCTCCAAAACCCTTTCAAGTCAATCTGGAACGCAAGAAGATGTTATAGACGTTGATGATGACACAGTGGATCTACTTGACGACTGTGATTCTCCTGAGATTGTTGAAGAAGATGGGTGTCGTTTTCTGTTGACAGATGAAAACATGGACCTTGTTGGAGCTGCTTATCCAGAAGAAGTGAAAAGGTTTTGGCATGAACAGGAACTGAAGGACGCGAGAAGGAAAAAGAATCCAACTTCAAAATCTCAAGAAAATGAAAAGTCGTCAACATCATCACCAAACTCGAAAGGTGTCCAGCTAAATATTACAGAGTTCTTCCCAACAACCAAAAGTAAACATAGTTCCAAACACGGAGAAGAGTCATCATCGAGAAAAAGTGATAGCCCGGACAGTGGAGGCTCAAAAGTGAAGAGAAAATCATCGAGTCCTAATATTCCGAAATCTGTGAGGCGTCGGCTTTTGTTTGATGACTAG 1848 0.4069 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHNNAVKTHVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSKARSARFFRSSGIESTSLPVSEGVSAERNRSFSICVQECVELAELLGIPVLKAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKCVIKSFSPNSKEPFECYNVSEIEAGLGLKRRHLIAIALLVGNDHDMNGVQGIGLDGALRFVQAFSEDDVLNRLHEIGKGNAFQVPIDIKSDDNMDIDGNSPNSKQPHCSFCGHPGNKRDHTKSSCEFCVTNDSEGCLKKPEGFKCDCNSCGMNRKNKEQKKIENWHTKICDKIAKEPNFPKDEIIAMYLCNDNGYFSAIDGPKISWERPKIELLIHFLNFHQNWDPSYIRRIMFPMMSTIFLREMATTTTTTTDSLLFGQFEFNSVKRVKTRYGYQIYVVKWKRAMGSIASKTLSSQSGTQEDVIDVDDDTVDLLDDCDSPEIVEEDGCRFLLTDENMDLVGAAYPEEVKRFWHEQELKDARRKKNPTSKSQENEKSSTSSPNSKGVQLNITEFFPTTKSKHSSKHGEESSSRKSDSPDSGGSKVKRKSSSPNIPKSVRRRLLFDD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02637 615 SMART xpgineu 127 197 IPR006086 GO:0004518
Vivi6g02637 615 Gene3D - 197 258 - -
Vivi6g02637 615 SUPERFAMILY PIN domain-like 6 212 IPR029060 -
Vivi6g02637 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 202 217 IPR006084 -
Vivi6g02637 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 126 143 IPR006084 -
Vivi6g02637 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 147 167 IPR006084 -
Vivi6g02637 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Vivi6g02637 615 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Vivi6g02637 615 FunFam Flap endonuclease GEN-like 1 2 196 - -
Vivi6g02637 615 SMART xpgn3 1 96 IPR006085 GO:0004518
Vivi6g02637 615 FunFam Flap endonuclease GEN-like 1 197 254 - -
Vivi6g02637 615 Pfam XPG I-region 130 212 IPR006086 GO:0004518
Vivi6g02637 615 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 197 414 IPR036279 -
Vivi6g02637 615 Gene3D - 3 196 - -
Vivi6g02637 615 MobiDBLite consensus disorder prediction 568 592 - -
Vivi6g02637 615 MobiDBLite consensus disorder prediction 525 540 - -
Vivi6g02637 615 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
Vivi6g02637 615 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 558 IPR006084 -
Vivi6g02637 615 CDD PIN_GEN1 2 201 - -
Vivi6g02637 615 MobiDBLite consensus disorder prediction 525 615 - -
Vivi6g02637 615 MobiDBLite consensus disorder prediction 541 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02637 Vivi-Chr6 110399527 110403990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02637 16 271 Core DNA Replication Machinery Family AT5G26680 26.780 1.05e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02637 K15338 - gmx:100791251 881.708