Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02634 ATGTTGGGTTCAGGGACAAATTTAGTTACAACTGTTATTGGATTTGGCATGAGTGCCACTTTCATTGTTTTTGTTTGTACAAGAATCATTTGTGGAAGACTTAGAGGTGGTGTTGAATCTAGGATGATGTATGAGATTGAATCAAGATATGACATAGAACAGCCAGAACATCATGTTAATGATCCTGATCCTGAACCAGTTATGCTTGAAGCTATCCCCACTTTGAAGTTCAATCAAGAGGCTTTCGGTTGCATTGAAGATACACAGTGTGTAATATGTTTGGCAGACTACAAAGAAAGAGAAATATTACGGATCATGCCAAAATGCGGCCACACTTTTCATCTTTGTTGCATTGATATATGGCTGAGGAAACAATCTACCTGTCCAGTATGCCGTCTGCCATTAAAAAACTCGTCCGAAACAAAACATGTGAGACCTGTGACATTCACCATGAGCCAACCTCTTGACGAGCCGTCACACACTTCAGAAAGGAACGCAGATATTGATAGGCACGATGAACCTACCACCGTTAACTCCATACAACCAACTTCTGAAGAACCAGAAGCAAGGCAATAG 576 0.408 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRYDIEQPEHHVNDPDPEPVMLEAIPTLKFNQEAFGCIEDTQCVICLADYKEREILRIMPKCGHTFHLCCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQPLDEPSHTSERNADIDRHDEPTTVNSIQPTSEEPEARQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02634 191 SUPERFAMILY RING/U-box 83 138 - -
Vivi6g02634 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 138 IPR013083 -
Vivi6g02634 191 MobiDBLite consensus disorder prediction 160 174 - -
Vivi6g02634 191 Pfam Ring finger domain 89 132 IPR001841 -
Vivi6g02634 191 CDD RING-H2_EL5-like 89 132 - -
Vivi6g02634 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Vivi6g02634 191 PANTHER OS11G0150450 PROTEIN 1 166 - -
Vivi6g02634 191 SMART ring_2 90 131 IPR001841 -
Vivi6g02634 191 MobiDBLite consensus disorder prediction 175 191 - -
Vivi6g02634 191 MobiDBLite consensus disorder prediction 146 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02634 Vivi-Chr6 110374102 110375946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02634 52 135 C3H Transcription Factor Family AT4G33565 38.095 4.12e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02634 - - ccaj:109802319 344.354