Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02627 ATGAGTTTTGGTGACAATAAGCCAGGTTGTGGTGAAAGTGCTAAACTCATAGCAGAAGCGGATATTAATGCTTTTAGCAACGGAACAAACCATAGCAGCAACAACAACAACAGTAGAATAATAATGCCTTCTGGTGCAATCTCACAACAACCTCGTTTATCATCTCCTACTTTGGTTAAATCCATGTTCAACTCACCTGGCCTATCTTTAGCACTTCAAACAAATATTGGTTTGAGAAGGAGTAGAGAAGAAGAAGATGAACATGAAAGTAGATCTGGTGGTAGTGAGAACATGGATGGTGTTTCTGGTGATGACTTTGATGCTGCCGACAATCCACCAAGAAAAAAACGTTATCACCGACACACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAGGAGTGTCCTCATCCTGATGAAAAACAAAGACTTGAACTCAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAATTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAACGCCATGATAATTCACTACTTAGGCAAGCAAACGATAAGCTAAGAGCTGAGAACATGTCAATAAGAGAAGCATTGAGGAATCCAATGTGTTCAAATTGCGGCGAACCAGCTATCATCAATGAAATATCACTTGAAGAACAACATCTAAGAATCGAAAACGCGAGATTAAAAGACGAGCTCGACCGAGTTTGTACGCTCGCCGGCAAGTTTTTAGGCCGGCCGATTACGTCGTTACCAAACTCAAGTTTAGACATCGGTTTCGTTGGTTTGAACCATAATACTTTACCTTCAACATTGCCTTTAGAACAAGATTTTGGTATATCAATGGAGAGATCTATGGTAACAAATAGTAGCAATGGAAATGGTTTTGATAGATCAATGGAGAGATCTATGTTTCTTGAACTTGCTTTATCTGCAATGGATGAGTTAGTGAAAATGGCTCAAACTAATGAGCCTCTTTGGATTAGAAGTGATGAAAGTGGAAGAGAAATTCTTAACCATGAGGAATATACAAGAACAGTTAGTACTTCTTGTATTGGTTTGAAACCTAATGGTTTTGTTTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAGATGTTTCCTTGTGTTATTGCAAGAGCTTCCACAAGTGAAGTGATATCTAATGGAATAAATGGAACTAGAAATGGTGCTCTTCAACTGATGCAAGCTGAACTTCAAGTACTTTCTCCGTTGGTTCCAGTTAGAGAAGTGAATTTTCTACGTTTTTGCAAGCAACATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCGATAGATACCTTCAGAGAAGCTTCTTCTGGCGGTGCACCTACTTTTCATAACTGTAGGAGGCTTCCTTCTGGTTGTGTGGTTCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCTGAATACGAAGAAAACGATGTTCACGAGCTCTACAAGCCCTTGCTAAGCTTAGGTATGGGGTTTGGCGCACAACGATGGGTTGCAACCCTCCAACGCCAATGCGAATGCCTAGCCATCTTAATGTCATCAGCACTCCCCACTAGAGAACAATCAGCAATTAGCGCGGGAGGAAGGCGTAGCATGCTAAAGCTAGCACAACGAATGACAAACAACTTTTGCGCGGGAGTTTGTGCATCAACAATACATAAATGGAACAAGCTAAACACAGGAAACATGGGCGAAAACATTAGGGTCATGACACGGAAGAGTGTCAATGATCCAGGTGAACCATCGGGGGTTGTGCTAAGTGCAGCAACCTCCATTTGGCTGCCAGTTTCTCCTCAAAGAGTCTTCAATTTTCTTCGCAACGAGGAGCTCAGAAGCGAGTGGGACATACTCTCCAACGGTGGACCAATGCAAGAAATGGCTCACATTGCCAAAGGACATGACCATGGCAACAGTGTGTCCCTCCTAAGAGCTAGTGCTATTAATTCAAACCAGAGTAGCATGCTGATTTTACAGGAGACTTGCACAGACGCGTCGGGGTCGCTTGTTGTGTACGCGCCGGTGGATATTCCCGCAATGCATGTGGTAATGAACGGGGGCGACTCCGCTTACGTTGCGTTACTTCCGTCAGGTTTTGCTGTGTTACCAGATGGACGTATTGACGGGAGTGATAGTCACGGCGGCGCGTCGCAGCAGAGAGGGACGGGATCTCTTTTGACAGTGGCGTTTCAGATACTTGTGAATAGTCTTCCCACGGCGAAGCTGACGGTGGAATCAGTGGAGACGGTGAATAATCTTATTTCTTGTACTGTTCAGAAGATAAAAGCAGCACTTCAGTGTGAGAGTTGA 2391 0.4304 MSFGDNKPGCGESAKLIAEADINAFSNGTNHSSNNNNSRIIMPSGAISQQPRLSSPTLVKSMFNSPGLSLALQTNIGLRRSREEEDEHESRSGGSENMDGVSGDDFDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHDNSLLRQANDKLRAENMSIREALRNPMCSNCGEPAIINEISLEEQHLRIENARLKDELDRVCTLAGKFLGRPITSLPNSSLDIGFVGLNHNTLPSTLPLEQDFGISMERSMVTNSSNGNGFDRSMERSMFLELALSAMDELVKMAQTNEPLWIRSDESGREILNHEEYTRTVSTSCIGLKPNGFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIARASTSEVISNGINGTRNGALQLMQAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTFREASSGGAPTFHNCRRLPSGCVVQDMPNGYSKVTWVEHAEYEENDVHELYKPLLSLGMGFGAQRWVATLQRQCECLAILMSSALPTREQSAISAGGRRSMLKLAQRMTNNFCAGVCASTIHKWNKLNTGNMGENIRVMTRKSVNDPGEPSGVVLSAATSIWLPVSPQRVFNFLRNEELRSEWDILSNGGPMQEMAHIAKGHDHGNSVSLLRASAINSNQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVLPDGRIDGSDSHGGASQQRGTGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02627 796 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 111 793 IPR042160 -
Vivi6g02627 796 CDD START_ArGLABRA2_like 303 534 - -
Vivi6g02627 796 MobiDBLite consensus disorder prediction 74 122 - -
Vivi6g02627 796 MobiDBLite consensus disorder prediction 78 94 - -
Vivi6g02627 796 Pfam START domain 308 535 IPR002913 GO:0008289
Vivi6g02627 796 CDD homeodomain 114 172 IPR001356 GO:0003677
Vivi6g02627 796 SMART START_1 308 535 IPR002913 GO:0008289
Vivi6g02627 796 FunFam Homeobox-leucine zipper protein HDG1 102 188 - -
Vivi6g02627 796 FunFam Homeobox-leucine zipper protein GLABRA 2 308 534 - -
Vivi6g02627 796 Gene3D - 103 188 - -
Vivi6g02627 796 ProSiteProfiles START domain profile. 299 538 IPR002913 GO:0008289
Vivi6g02627 796 SMART HOX_1 113 176 IPR001356 GO:0003677
Vivi6g02627 796 SUPERFAMILY Homeodomain-like 98 172 IPR009057 -
Vivi6g02627 796 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677
Vivi6g02627 796 SUPERFAMILY Bet v1-like 300 535 - -
Vivi6g02627 796 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981|GO:0006355
Vivi6g02627 796 Pfam Homeodomain 115 170 IPR001356 GO:0003677
Vivi6g02627 796 SUPERFAMILY Bet v1-like 563 789 - -
Vivi6g02627 796 Coils Coil 181 201 - -
Vivi6g02627 796 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02627 Vivi-Chr6 110168654 110173510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02627 63 796 Homeobox Transcription Factor Family AT3G61150 65.625 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi6g02627 START 6.8e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02627 K09338 - gmx:100783614 1213.36