Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02598 ATGGGTGTTGGTGGTAATTTCTGGGATTTGTTGAAGCCCTATGCGCGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGATCTTTCATTCTGGATTGTTCAGCATAACAATGCTGTTAAAACGCTTGTCAAGAAGCCTCACCTCAGACTCACTTTCTTCCGTACGATTAATCTCTTTTCAAAGTTTGGAGCATTTCCTGTGTTCGTTGTTGATGGGACTCCATCGCCATTGAAATCAAAGGCCAGGAGTGCTAGATTTTTCCATTCTTCTGGAATTGAATCGACTAGCTTGCCAGTTTCTGAAGGTGTTTCAGCTGAGAGGAACCGTTCATTTTCAATATGTGTTCAAGAGTGTGTGGAACTTGCCGAGCTACTTGGGATTCCTGTACTAAAAGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTAGATGCGTGCATCACATCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCGTGATAAAATCTTTCTCTCCCAATTCCAAAGAACCGTTTGAATGCTACAATGTGTCAGAGATTGAGGCCGGGCTTGGATTGAAGAGGAGACACCTAATAGCTATCGCTCTTTTGGTTGGAAATGATCATGATATGAACGGCGTTCAAGGGATTGGACTTGATGGTGCTCTTTGTTTTGTTCAAGCTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAGTTCCTATCGACATTAAATCTGACGACAATATGGATATTGATGGGAACTCCCCAAATTCAAAACAACCTCACTGCTCATTCTGTGGTCATCCAGGCAACAAAAGAGATCATACGAAGTCTTCATGTGAATTTTGTGTCACAAATGACAATGAAGGTTGCTTGAAAAAGCCCGAAGGTTTTAAATGTGATTGTAACTCTTGTGGTATGAATAGGAAAAATAAGGAGCAGAAAAAGATTGAAAATTGGCACACAAAAATTTGTGAGAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGCTATGTATTTATGCAATGACAATGGTTACTTTTCTGCAATTGATGGCCCTAAGATCTCGTGGGAAAGACCGAAAATTGAGCTTCTGATACATTTTTTGAACTTCCATCAGAACTGGGATCCGTCATACATTCGACGGATAATGTTTCCTATGATGTCCACTATCTTCTTGAGAGAAGTGGCTACAACTACTACTACAGATAGTTTGTTATTTGGACAGTTTGAGTTTAATTCTGTAAAACGTGTGAAGACGAGATACGGATATCAGATTTATGTTGTCAAGTGGAAACGCGCAATGGGTAACATTGCCTCCAAAACCCTTTCAAGTCAATCTGGAACGCAAGATGTTATAGACGTTGATGATGACACAGTGGATCCACTTGACGACTGTGATTCTCCCGAGATTGTTGAAGAAGATGGGTGTCGTTTTCTGTTGACAGATGAAAATATGGACCTTGTTGGAGCTGCTTATCCAGAAGAAGTGAGAAGGTTTTGGCATGAACAGGAACTGAAGGATGCGAGAAGGAAAAAGAATCCAACTTCAAAATCTCAAGAAAATGAAAAGTCGTCAACGTCATCACCAAACTCGAAAGGTGTCCAGCTAAATATTACAGAGTTTTTCCCAACGACCAAAAGTAAACATAATTCAAAACATGGAGAAGAGTCATCATCGAGAAAAAGTGATAGCCCGGACAGTGGAGGCTCAAAAGTGAAGAGAAAATCGTCGAGTCCTAATATTCCGAAATCTGTGAGGCGTCGGCTTTTGTTTGATGACTAG 1839 0.404 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHNNAVKTLVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSKARSARFFHSSGIESTSLPVSEGVSAERNRSFSICVQECVELAELLGIPVLKAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKCVIKSFSPNSKEPFECYNVSEIEAGLGLKRRHLIAIALLVGNDHDMNGVQGIGLDGALCFVQAFSEDDVLNRLHEIGKGNAFQVPIDIKSDDNMDIDGNSPNSKQPHCSFCGHPGNKRDHTKSSCEFCVTNDNEGCLKKPEGFKCDCNSCGMNRKNKEQKKIENWHTKICEKIAKEPNFPKDEIIAMYLCNDNGYFSAIDGPKISWERPKIELLIHFLNFHQNWDPSYIRRIMFPMMSTIFLREVATTTTTDSLLFGQFEFNSVKRVKTRYGYQIYVVKWKRAMGNIASKTLSSQSGTQDVIDVDDDTVDPLDDCDSPEIVEEDGCRFLLTDENMDLVGAAYPEEVRRFWHEQELKDARRKKNPTSKSQENEKSSTSSPNSKGVQLNITEFFPTTKSKHNSKHGEESSSRKSDSPDSGGSKVKRKSSSPNIPKSVRRRLLFDD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02598 612 SMART xpgineu 127 197 IPR006086 GO:0004518
Vivi6g02598 612 Gene3D - 197 258 - -
Vivi6g02598 612 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 555 IPR006084 -
Vivi6g02598 612 Pfam XPG I-region 130 212 IPR006086 GO:0004518
Vivi6g02598 612 MobiDBLite consensus disorder prediction 565 589 - -
Vivi6g02598 612 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Vivi6g02598 612 MobiDBLite consensus disorder prediction 522 537 - -
Vivi6g02598 612 SMART xpgn3 1 96 IPR006085 GO:0004518
Vivi6g02598 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 202 217 IPR006084 -
Vivi6g02598 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 147 167 IPR006084 -
Vivi6g02598 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Vivi6g02598 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Vivi6g02598 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 126 143 IPR006084 -
Vivi6g02598 612 SUPERFAMILY PIN domain-like 6 212 IPR029060 -
Vivi6g02598 612 FunFam Flap endonuclease GEN-like 1 197 254 - -
Vivi6g02598 612 FunFam Flap endonuclease GEN-like 1 2 196 - -
Vivi6g02598 612 MobiDBLite consensus disorder prediction 522 612 - -
Vivi6g02598 612 MobiDBLite consensus disorder prediction 538 564 - -
Vivi6g02598 612 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 197 412 IPR036279 -
Vivi6g02598 612 CDD PIN_GEN1 2 201 - -
Vivi6g02598 612 Gene3D - 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02598 Vivi-Chr6 109895237 109899629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02598 16 312 Core DNA Replication Machinery Family AT5G26680 25.595 5.58e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02598 K15338 - gmx:100791251 885.174