Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02579 ATGAACACATCAAACCCAACAGCTTCTCCTCCGCCGTATTCCACCTCCGGCGACACCGAACCCTTCCTTCTCCGCACTCGCCGCTCCCTCAGCCGCACACCACCTCCGCCACTCCGCACCGCCGCTCGTTTCTTCCGTCGAGCTAGCTCAGAGCGCATGATGCTCCGTGAGCCGTCGTTGCGTGTCCGGGAGAGGGCGGCGGCGGAGGTGGAAGAGCGGCAGAGTGAGTGGGCTTACTCGAAGCCGGTGGTGACACTTGACGTGGGGTGGAACTTGTCGTTTTTGGTGGTTAGTGCTGTTGTTTTGTGGGGTAGTAGGAAGGAGGAGGCGTGTGTGCCTCTTAGGGTGTGGATTTTGGGGTACTTGTTGCAGGGATTGGTTCATTCTTTATTTGTTGTTTTGGAATTTAGAAGGAGGAGAAGGAGGAATAACCGTTTTGAAGATGATTCTTCTTCTTGGAGTTTTAGTTCTGAGAGTGGTTCTGATGTTGTTTCTGAGCAGTTTTTGGAGAATCAGGAAAATAGGATTATGAAGTACATAGAGTCAGCAAATACCGTTCTATCATTCGTATGGTGGATTCTTGGGTTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGATTCGCCTCAGCTTTATTGGCTTTGTATCATATTTCTTGCTTTTGACGTTGCGATTGTTGTGATTTGTGTTACTGCTGCATGTCTCATTGGAATCGCTGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAAGGCGCAACCAAGGAAGAGATTGACCTGTTGCCAAAATTTAAGTTCAGAATAGTAAAGGAATTTAAGAAAGAGTGTAATGCCCAAGAATCATCCAGAGGAGTGATGACGGAATGCGACAGTGATTCAGCTTCTGAGCATATTATTGCCTTAGAAGATGCAGAATGCTGTATTTGTCTTTCGGCCTATGATGATGGAGCTGAACTTAGAGAACTTCCTTGCAACCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATTCTACCTGTCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGAAGTTTGA 1107 0.4679 MNTSNPTASPPPYSTSGDTEPFLLRTRRSLSRTPPPPLRTAARFFRRASSERMMLREPSLRVRERAAAEVEERQSEWAYSKPVVTLDVGWNLSFLVVSAVVLWGSRKEEACVPLRVWILGYLLQGLVHSLFVVLEFRRRRRRNNRFEDDSSSWSFSSESGSDVVSEQFLENQENRIMKYIESANTVLSFVWWILGFYWVTAGGQSLTRDSPQLYWLCIIFLAFDVAIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEGATKEEIDLLPKFKFRIVKEFKKECNAQESSRGVMTECDSDSASEHIIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINSTCPLCKFNILSTDNLQEV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02579 368 CDD RING-H2_RNF6-like 314 356 - -
Vivi6g02579 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 362 IPR013083 -
Vivi6g02579 368 Pfam Ring finger domain 314 356 IPR001841 -
Vivi6g02579 368 ProSiteProfiles Zinc finger RING-type profile. 315 356 IPR001841 -
Vivi6g02579 368 MobiDBLite consensus disorder prediction 1 22 - -
Vivi6g02579 368 PANTHER TARGET OF ERK KINASE MPK-1 48 362 - -
Vivi6g02579 368 SMART ring_2 315 355 IPR001841 -
Vivi6g02579 368 MobiDBLite consensus disorder prediction 1 35 - -
Vivi6g02579 368 SUPERFAMILY RING/U-box 305 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02579 Vivi-Chr6 109513744 109516160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02579 9 363 C3H Transcription Factor Family AT1G68070 46.927 1.64e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02579 - - tpra:123891576 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02579 6 109513744 109516160 Vivi6g02579 6 109513744 109516160 ECH