Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02569 ATGGTGAGAGGAAAAACTCAGATGAAACGTATAGAGAATGCAACAAGCAGACAAGTTACATTTTCAAAGAGAAGAAATGGTTTGTTGAAGAAAGCTTTTGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTCATCATCTTTTCTCCAAGAGGAAAACTTTATGAGTTTTCTAGCTCCTGCATGCAGGACACAATTGAACGGTACCGTAGAAATACCAGGAGTGCTCAACCATTGCAAAGATCAGATGAACAAAATATGCAGAATTTGAAGCAAGAAACAGCAAGTTTGATGAAAAAGATTGAGCTTCTTGAAGCTTCGAAACGGAAACTCATGGGAGAAGGTTTGGGTTCATGCTCCTTGGAAGAACTACAACAGATAGAACAACAGTTGGAAAAGAGTGTAAGCACTGTTAGAGCAAGAAAGAATCAGGTTTACAAGAATCAAATTGAGCAACTTAAAGAAAAGGAAAAAGCCCTACTTGCTGAAAATTCCAGGCTCTCTAAGCAGCCACAACCACCACCACTGCCACCACCGCCAACTAATGATCCTCCGAGAGAAAATCAAAATCAAGCGTACGCGGAGAGCAGCAGTCCAAGCTCCGATGTGGTGACTGAATTGTTCATTGGACTACACAGGTCTTGTTGA 648 0.412 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSCMQDTIERYRRNTRSAQPLQRSDEQNMQNLKQETASLMKKIELLEASKRKLMGEGLGSCSLEELQQIEQQLEKSVSTVRARKNQVYKNQIEQLKEKEKALLAENSRLSKQPQPPPLPPPPTNDPPRENQNQAYAESSSPSSDVVTELFIGLHRSC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02569 215 Coils Coil 121 141 - -
Vivi6g02569 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Vivi6g02569 215 FunFam MADS-box protein SOC1 14 95 - -
Vivi6g02569 215 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Vivi6g02569 215 MobiDBLite consensus disorder prediction 186 203 - -
Vivi6g02569 215 MobiDBLite consensus disorder prediction 160 203 - -
Vivi6g02569 215 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Vivi6g02569 215 Coils Coil 143 170 - -
Vivi6g02569 215 Coils Coil 87 107 - -
Vivi6g02569 215 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi6g02569 215 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Vivi6g02569 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi6g02569 215 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi6g02569 215 MobiDBLite consensus disorder prediction 170 185 - -
Vivi6g02569 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi6g02569 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi6g02569 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi6g02569 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi6g02569 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi6g02569 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02569 Vivi-Chr6 109270622 109299117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02569 1 158 MADS-box Gene Family AT2G45660 77.215 5.55e-85 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi6g02569 K-box 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02569 - - gmx:100037477 308.531