Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02551 ATGAGTTTCTTTCAGGGAATAATTGATTCATTTAACTCTGTTTTCTCTCCTCAATCCTTCAATCCCAATTCATCATCATCTTCTTCTGAAACAAATCTCAGTACAATGGAACCTTCTCCTTCTTCGATTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGATACTTCGATTTGGCCACGCAAGAGATCGATAAAGCTGTTAGGGCTGAAGAGTGGGTGTTGATTGATGATGCTATTCTTCACTACAGGAATGCTCAAAGGATCCTTCTCGAAGCTAATTCAACTCCGGTTCCTTCCTTCATCACTTCCAGTGAGAAACAGAAGGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGGCAAGTTTCTGAGAGATTGCAGGCTCTTAATAGACGGGCAGGTAGCTCGGTTTCCACTCAGAGTACCTCAAACCATGCACAAGCTGCTGCAATTCCAACTAAACTGTCAAATACTACAAAAAAAGTGTTACAAAAAAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAGCCCAAACTCTAGTCAAACATCCGGTGCAAATTATGACACAAAACTGGTTGAAATGATTAACAATGCCATTGTAGACAGAAGTCCTTCTGTTCGATGGGATGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTGATTTTACCAACTAAGCGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCCGGTAATGGTAAGACCATGCTTGCCAAAGCAGTGGCTTCGGAATCAGAAGCAACTTTTTTTAACGTCACGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGCTGAAAAGCTTGTACGGACACTATTCATGGTGGCTACATCAAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGACGGCAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTTAGAAGACTGGTTAAGAGAATATATGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAATCATTCTCTTTACCTAGTAGAGATCTAGAAATGCTTGTAAAAGAGACCGAAGGATACTCTGGCAGTGATTTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGCTCAAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGATTTCAAGAAAGCAATGTCTGTCATTAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAAAAGTGGAACGAAGAGTTTGGCTCAAATTGA 1452 0.4098 MSFFQGIIDSFNSVFSPQSFNPNSSSSSSETNLSTMEPSPSSISNERVAYKLKGYFDLATQEIDKAVRAEEWVLIDDAILHYRNAQRILLEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVSTQSTSNHAQAAAIPTKLSNTTKKVLQKNPQRKDEVNKVQSPNSSQTSGANYDTKLVEMINNAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQSFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVKANQVRGLRYEDFKKAMSVIRPSLNKSKWEELEKWNEEFGSN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02551 483 CDD RecA-like_spastin 213 376 - -
Vivi6g02551 483 FunFam AAA-type ATPase family protein 45 134 - -
Vivi6g02551 483 MobiDBLite consensus disorder prediction 18 42 - -
Vivi6g02551 483 Gene3D - 44 134 - -
Vivi6g02551 483 ProSitePatterns AAA-protein family signature. 350 369 IPR003960 GO:0005524|GO:0016887
Vivi6g02551 483 MobiDBLite consensus disorder prediction 136 164 - -
Vivi6g02551 483 Pfam ATPase family associated with various cellular activities (AAA) 248 378 IPR003959 GO:0005524|GO:0016887
Vivi6g02551 483 FunFam Spastin, putative 207 391 - -
Vivi6g02551 483 Gene3D - 207 477 IPR027417 -
Vivi6g02551 483 PANTHER AAA DOMAIN-CONTAINING 107 482 - -
Vivi6g02551 483 SMART smart 52 129 IPR007330 -
Vivi6g02551 483 Pfam AAA+ lid domain 403 434 IPR041569 -
Vivi6g02551 483 Gene3D - 379 461 - -
Vivi6g02551 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 480 IPR027417 -
Vivi6g02551 483 MobiDBLite consensus disorder prediction 174 189 - -
Vivi6g02551 483 MobiDBLite consensus disorder prediction 136 189 - -
Vivi6g02551 483 CDD MIT_spastin 52 130 - -
Vivi6g02551 483 SMART AAA_5 244 380 IPR003593 GO:0016887
Vivi6g02551 483 Pfam Vps4 C terminal oligomerisation domain 449 481 IPR015415 -
Vivi6g02551 483 FunFam AAA-type ATPase family protein 379 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02551 Vivi-Chr6 108710647 108716418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02551 189 433 Calmodulin-binding Proteins AT3G56690 41.339 6.11e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02551 K13254 - gmx:100780946 770