Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02546 ATGACGACGCCGTCTCAAGAAAAACGCCACCGTTCCATTTTCGAACTTCCCCCAAACTACTTCGACTCTTGCCGTCTTCTCCCTTCTCCTCATTCCTCCGTTTCCGACCTCAACGCAAATCACGAAAACCTCCAATTACCCTCAAACGACGCCGTCGTTTTGGGTACTCGGTTAACCTGCAATACTTGTAAGGCTCAGTTCGATTCTCTTGAAGACCAACGTTCCCACTTCAAATCCGATATTCATCGATTCAATGTGAAGCTGACAGTTGCTGGGAAACATATTGTGAAAGAAGAAGATTTTGAGGTTCTGACATCTGATTTTGTGAAAGACTATGATGTGTCAAGTATATCTGGTTCGGAAAGTGATACCGATGACGACGATGATAGTGAAAATGAGGGTCGAGTTCGAAGTGTTGTGCGTGGTAGTAAGTACGGTGAAAGCTTTAAACAGAAGCTGTTTGTGTGTCTTCAGACAGGGCAGAGAGTTTCTGTGTGGAAGTGTTTGATAATGAATGTGAATGAGAGTGTGTTGTATGAGGATGAACAAGTGCAGAGAAATTTGGCTGAGAGGTTGAAATCTCTGACTGTTGAGCCCAGGGATAATAGCCGTTTGAGGATTGTTTTGCTTGCATCTGGTGGGCACTTTGCGGGGTGTGTCTTTGATGGTGAAACGGTTGTGGCGCACAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGGAAAAAACAGTCTACAAATGATGCTTCTGGAAGGGTTGCACATTCTGCCGGTGCTTCACTTCGTCGTTATAATGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTACTGCTTGGAGACCTTATTTTGATGCTTCTATTTCCATTTTTATACATGCACCTTCAAATAGTCGTCAACTGCTTTATGATGGAGAAAAGCCATGCTTTACCAATTCACAATATGCCAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTCAGGGAAGCAAAACGTGTATATGGCCAGTTGACCCTAGTATCTTATGAAGCAGATGAGAAGGAAATTTTACAGAGCCATCAACAGGACGCGGTGCCACCAATTCGTATTGCTAAAAGAAATGGTGCCCCTCCTGCCAGCAAAGTGGACATGGCTGGATTGGATAAAAACAACAAAGCTGAAGCTTGTTCCAGTAACCAAAATGATGAACCTCTTATTTCGAGTAACGACGAAAGTGAGAATGAGTTATCTGACAAGTCAACTCCTTTACATCAAGCAGCACAATCTGCTGACTCTCAGAAGGTTATGGAACTCCTGGAACAAGGCTTGGATCCATGCATCAAAGATGAAAGGGGACAGACCCCGTATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCCTGACAAATGGGATTGGAATGCTGCAAAAGTGCCTAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAGAAAAGCTAGAGCAAAAGAATTGAAGAAATTACGCAAGGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTGCTGAAAAACAGAAGATTGCTTCAACATCTGCTACAGGACAATCACAATCAAAAAGTGGTGTGAAATTATCAAAAGAGGAGGAAATAAAAAGAGCGCAGGCTGAAGAAAGAGAAAAGAGAGCTGCTGCTGCTGAGAGAAGAATGGCTGCCCTCAAAATCCAATCTAATAATACATCAGAGGCTAATAAAAGTGGATTAGCTGGTGACACATTATGTTCCTGCTGTAATTCATCACTTGCTGGTAAAGTTCCATTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCACGTACACAGAGAGATCCTAGAGGATGGATGA 1905 0.4315 MTTPSQEKRHRSIFELPPNYFDSCRLLPSPHSSVSDLNANHENLQLPSNDAVVLGTRLTCNTCKAQFDSLEDQRSHFKSDIHRFNVKLTVAGKHIVKEEDFEVLTSDFVKDYDVSSISGSESDTDDDDDSENEGRVRSVVRGSKYGESFKQKLFVCLQTGQRVSVWKCLIMNVNESVLYEDEQVQRNLAERLKSLTVEPRDNSRLRIVLLASGGHFAGCVFDGETVVAHKTFHRYVVRAKAGKKQSTNDASGRVAHSAGASLRRYNELALKKEVHELLTAWRPYFDASISIFIHAPSNSRQLLYDGEKPCFTNSQYARNIAMIVRRPTLREAKRVYGQLTLVSYEADEKEILQSHQQDAVPPIRIAKRNGAPPASKVDMAGLDKNNKAEACSSNQNDEPLISSNDESENELSDKSTPLHQAAQSADSQKVMELLEQGLDPCIKDERGQTPYMLAPDKEVRNTFRRFMASNPDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQAEAAEKQKIASTSATGQSQSKSGVKLSKEEEIKRAQAEEREKRAAAAERRMAALKIQSNNTSEANKSGLAGDTLCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHREILEDG 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02546 634 MobiDBLite consensus disorder prediction 529 546 - -
Vivi6g02546 634 MobiDBLite consensus disorder prediction 492 506 - -
Vivi6g02546 634 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 5 633 IPR047139 -
Vivi6g02546 634 MobiDBLite consensus disorder prediction 387 406 - -
Vivi6g02546 634 Pfam Vms1-associating treble clef domain 598 629 IPR041540 -
Vivi6g02546 634 Gene3D - 376 480 IPR036770 -
Vivi6g02546 634 MobiDBLite consensus disorder prediction 353 427 - -
Vivi6g02546 634 Coils Coil 489 528 - -
Vivi6g02546 634 Coils Coil 548 587 - -
Vivi6g02546 634 ProSiteProfiles Ankyrin repeat profile. 413 445 IPR002110 GO:0005515
Vivi6g02546 634 MobiDBLite consensus disorder prediction 487 572 - -
Vivi6g02546 634 MobiDBLite consensus disorder prediction 116 135 - -
Vivi6g02546 634 ProSitePatterns Zinc finger C2H2 type domain signature. 60 82 IPR013087 -
Vivi6g02546 634 SUPERFAMILY Ankyrin repeat 413 468 IPR036770 -
Vivi6g02546 634 Pfam Bacteroidetes VLRF1 release factor 207 344 IPR041175 -
Vivi6g02546 634 MobiDBLite consensus disorder prediction 547 572 - -
Vivi6g02546 634 ProSiteProfiles Ankyrin repeat region circular profile. 413 445 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02546 8 585 C2H2 Transcription Factor Family AT1G01930 50.744 0.0 533