Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02540 ATGCCTGGAAGAGTTCGGGTGGCTGTAAGATTGAGGCCTCGAAATGCTGAAGAAGAAATGGCAGATGCTGATTTTGGTGACTGTGTCGAATTACAGCCAGAGCTTAAAAGACTGAAACTTCGCAGAAACAATTGGGATTCAGACACTTATGAGTTTGATGAGGTGCTTACTCAATCCGCATCCCAGAAGCGTGTCTATGAGGTTGTGGCTAAGCCAGTCGTGGAGAGTGTTCTTGATGGTTATAATGGGACCGTGATGGCTTATGGTCAAACTGGAACGGGGAAAACTTTTACTCTTGGACAATTAGGGGAAGGAGACACATCTAGTCGTGGAATCATGGTGCGTTCCATGGAGGATATTCTTGCTGATTTATCTCTAGATACTGATGCTGTTACAGTCTCCTATCTGCAGCTTTACATGGAGACTCTTCAGGACTTGCTTAATCCAGCAAATGACAACATTCCGATAGTGGAAGATCCAAGAACTGGCGATGTATCTCTGCTTGGGGCAACTATTGTAGAAATCAGGGATCAGCAGAGCTTTTTGGAGTTGTTAAGAATCGGGGAAGCAAATCGGACTGCTGCTAATACCAAAATGAACACAGAATCTTCTCGTAGTCACGCTATGCTGACGGTACATATTAAGAGGTCTGTCGCAGAAAGCGAAGATATTGTATCTAGTCAAAATGGTGATGCCTCTCACTTGATTAAACCCTCAAAACCACTTGTTCGGAAGAGCAAGTTGGTAGTGGTAGACTTAGCAGGTTCAGAGCGTGTTCACAAATCAGGAAGTGAAGGGATCATGCTAGAGGAAGCTAAATCCATTAATCTTTCACTTAGTTCACTAGGAAAATGTATTAATGCCCTAGCAGAGAATAATACTCATGTTCCATTTCGTGATTCAAAGCTCACCAGGATGCTCCGAGATTCTTTTGGTGGCACAGCTAGGACTTCCTTGATAGTGACTATTGGTCCATCTCCACGCCATCGAGGAGAGACTTCCAGTACCATATTGTTTGGCCAAAGGGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAGGAGTTTGATTATAAAAGCCTGTCACGAAAGCTTGAAATACAGTTAGATAAGCTCATTGCAGAGAATGAGAGGCAGCATAAATCTTTCGAGGATGACATTGAAAAAATAAATTTGGAAGCGCAGTGTCGAATTGTTGAGGTTGAGAGAAGCTTTGCTAATGCGTTAGAGAAAGAGAAACTGAAATGCCAAATGGAGTATATGGGAATTGTAAAGGAGCTGGAACAGAAGTTGGTGTTGAATCAAGACAGACATGATTGCAATGCTGATAACGGAGAGGGTCCTGCACAATCTTCTGCAGATGAAGTTGCTGAGATCAAAATGCTGCTCGAAACTGAAAGCAATAGAAGAAAAGCAGCTGAAGAAGAGATAACACATCTAAAACGGAAGCTGGGGAATTATACACAACCGGAGGCCGGAGGGGGTTTGGAGATTGCAAAGCTTCACAACATCCTGGAGGAGGAAGCTCATCAGAAAAAGAAACTTGAAGAAGAGATAATAATATTAAGAAGTCAATTATTGCAAGCAAACTTTGAAACTGAGCAGATGAGAAGGTGTTTGGAAGGTGGAGGCTCTGGGAGTGCATTTTCTACCACAGATTCCTCCACGGCTCAAGTTAGGCATTCCCAATTCAAAGATGCTGCGAATGGTCAGAAGTCATCTGTTGCTACACTCTTTGAGCAAGTTGGATTGCAAAAGATATTGTCATTGCTGGAGTCAGATGATGCCAATGTACGAATTCATGCTGTGAAAGTGGTGGCCAACCTAGCAGCCGAAGAAGCTAATCAAAAAAGAATTGTTGAAGCTGGTGGTCTTACTTCCTTGCTGATGCTTCTTCGAAGATATGAGGATGAAACTGTTCGCAGAGTAGCTGCTGGGGCAATTGCCAATCTTGCTATGAATGAAGCGAATCAAGAACTTATAATGGCTGAAGGAGGAATCACTCTGTTATCAATGGCTGCATCCGATGCTGAAGATCCCCAAACTCTTCGAATGATTGCCGGGGCAATTGCTAACCTATGTGGAAATGATAAAATATTGATGACACTGAGATCTCAGGGCGGTATCAAGGCCTTACTGGGAATCGTAAGATGTGGACATCCAGATGTTCTTTCCCAAGTTGCACGAGGAATCGCCAATTTTGCGAAATGCGAGTCTCGAGCTTCTAATCAAGGGATAAAAACTGGCCGATCTATATTGATAGAAGATGGTGCTCTTCCGTGGATAGTACAAAATGCTAATAATGAAGCAGCACCAATTAGGCGTCACATTGAGCTTGCACTTTGCCACTTGGCACAGCATGAGGCAAATGCAAAGGACATGATTAGTGGTGGTGCTCTTTGGGAACTTGTCAGGATTTCAAGGGATTGTTCACGAGAGGATATACGGAGTCTTGCTCATAGGACTCTCAGTTCTATTACAACATTCAAATCTGAATTGCGACGATTGCGTGTAGATTATTGA 2523 0.4304 MPGRVRVAVRLRPRNAEEEMADADFGDCVELQPELKRLKLRRNNWDSDTYEFDEVLTQSASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGQLGEGDTSSRGIMVRSMEDILADLSLDTDAVTVSYLQLYMETLQDLLNPANDNIPIVEDPRTGDVSLLGATIVEIRDQQSFLELLRIGEANRTAANTKMNTESSRSHAMLTVHIKRSVAESEDIVSSQNGDASHLIKPSKPLVRKSKLVVVDLAGSERVHKSGSEGIMLEEAKSINLSLSSLGKCINALAENNTHVPFRDSKLTRMLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEIQLDKLIAENERQHKSFEDDIEKINLEAQCRIVEVERSFANALEKEKLKCQMEYMGIVKELEQKLVLNQDRHDCNADNGEGPAQSSADEVAEIKMLLETESNRRKAAEEEITHLKRKLGNYTQPEAGGGLEIAKLHNILEEEAHQKKKLEEEIIILRSQLLQANFETEQMRRCLEGGGSGSAFSTTDSSTAQVRHSQFKDAANGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMAASDAEDPQTLRMIAGAIANLCGNDKILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQGIKTGRSILIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEANAKDMISGGALWELVRISRDCSREDIRSLAHRTLSSITTFKSELRRLRVDY 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02540 840 Coils Coil 498 532 - -
Vivi6g02540 840 SMART arm_5 787 828 IPR000225 GO:0005515
Vivi6g02540 840 SMART arm_5 612 653 IPR000225 GO:0005515
Vivi6g02540 840 SMART arm_5 654 695 IPR000225 GO:0005515
Vivi6g02540 840 SMART arm_5 572 611 IPR000225 GO:0005515
Vivi6g02540 840 SMART arm_5 696 736 IPR000225 GO:0005515
Vivi6g02540 840 SMART kinesin_4 2 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vivi6g02540 840 Pfam Armadillo/beta-catenin-like repeat 615 652 IPR000225 GO:0005515
Vivi6g02540 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 379 IPR027417 -
Vivi6g02540 840 FunFam Kinesin-like protein 1 376 - -
Vivi6g02540 840 PRINTS Kinesin heavy chain signature 247 265 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vivi6g02540 840 PRINTS Kinesin heavy chain signature 80 101 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vivi6g02540 840 PRINTS Kinesin heavy chain signature 296 317 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vivi6g02540 840 Pfam Kinesin motor domain 10 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vivi6g02540 840 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 623 666 IPR000225 GO:0005515
Vivi6g02540 840 CDD KISc 4 344 - -
Vivi6g02540 840 Gene3D - 559 672 IPR011989 -
Vivi6g02540 840 Gene3D - 673 839 IPR011989 -
Vivi6g02540 840 Coils Coil 456 483 - -
Vivi6g02540 840 Coils Coil 373 393 - -
Vivi6g02540 840 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 582 624 IPR000225 GO:0005515
Vivi6g02540 840 Gene3D Kinesin motor domain 1 376 IPR036961 -
Vivi6g02540 840 ProSitePatterns Kinesin motor domain signature. 246 257 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vivi6g02540 840 ProSiteProfiles Kinesin motor domain profile. 4 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vivi6g02540 840 SUPERFAMILY ARM repeat 571 834 IPR016024 -
Vivi6g02540 840 PANTHER CENTROMERE PROTEIN E 4 566 IPR027640 GO:0003777|GO:0007018
Vivi6g02540 840 FunFam Kinesin-like protein 552 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02540 Vivi-Chr6 108195693 108208874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02540 1 379 Calmodulin-binding Proteins AT5G65930 35.038 2.29e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02540 - K10396 gmx:100789455 1467.98