Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02532 ATGAGTCTAACCTCTACCGGCAGCGGCGGTGGTGGCGGAAGCCCTTGTGGAGCATGCAAGTTTTTGAGGAGGAAGTGTGTGCAAGATTGTGTTTTTGCTCCGTATTTCGATTCGGAGCATGGTGCATCACACTTTGCAGCTGTGCACAAAGTGTTTGGGGCTAGCAATGTATCAAAACTCCTCCTTGGTATTCCAGTTAATAGGAGGTTTGATGCTACAATCTCTCTTTGCTATGAAGCTCAATCAAGGTTGAGAGATCCTGTCTATGGATGTGTTGGTCACATCTTTGCCCTCCAGCAACAGGTGATGACTTTACAAGCTGAGCTCTCCTACTTACAAAGCCAGCTTAACTCAACAGAACCACCACAGGCGCCTGCAGCACCACCAATGGTCTTCTCCGTTGCCGACCTACCACCATCCACCGCCACAACCATGCCGGCCACCTATGACATGTCTACACTTTTTGATCCAATGGGCCAGCCTGCATTGTCCATGCAACAAGAGAGGCTCAATATTGACCCGCGTCAATATGGAGCTGCTCATGGCCCAATATCAACCACTGGTTCTGGGCTTCAATTAGTGGCATGTGACCTTTCTCATAGACAAGTTGGTTCTTCATCAGGATCATCCTCCAAAGTTTCATCATCTCCTTCCTTTTCCAAATTTTATAAATGA 675 0.477 MSLTSTGSGGGGGSPCGACKFLRRKCVQDCVFAPYFDSEHGASHFAAVHKVFGASNVSKLLLGIPVNRRFDATISLCYEAQSRLRDPVYGCVGHIFALQQQVMTLQAELSYLQSQLNSTEPPQAPAAPPMVFSVADLPPSTATTMPATYDMSTLFDPMGQPALSMQQERLNIDPRQYGAAHGPISTTGSGLQLVACDLSHRQVGSSSGSSSKVSSSPSFSKFYK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02532 224 MobiDBLite consensus disorder prediction 202 224 - -
Vivi6g02532 224 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
Vivi6g02532 224 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Vivi6g02532 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02532 Vivi-Chr6 108103373 108106355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02532 18 202 AS2 family AT2G45420 52.913 5.44e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi6g02532 LOB 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02532 K21994 - gmx:100777737 258.07