Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02531 ATGGATTTGGGATGTGGTGGTAGTAGAGATGGTGATGGTGGTGGACCTTGTGGTGCGTGCAAGTTTCTAAGAAGAAAGTGTGTGAAAGGTTGTTGCATATTTGCACCATACTTTGAGTCATCAGGTCAAGGAAGTGCTCATTTTGCTGCTATTCACAAAGTGTTTGGTGCTAGCAATGCATCTAAGCTACTCACACGCATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTCTGCTATGAGGCTCTTGCTAGGGCTACTGACCCTGTGTATGGTTGTGTTGCTCACATCTTTTCTCTTCAACAACAGGTTGTGGAGTTGCAAGCTGAGTTAGCCTATGTTCAAGCTCGTCTTTCCATATTGAATCGCATCTCCGAAGATCCTCAGTTTCAACAGCCTCAAAGCACTTCAATGTACTTTGATCACCCCCCTCTTCAACATGATCAATATCATCCAACACCTTTTGAATTAAGCAACATTGGCAATCCATCATACTATTCCTATCATCAAGAGCTCCATGACCAGGAGCTTCAAGATTTGCCTTGA 549 0.4335 MDLGCGGSRDGDGGGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAIHKVFGASNASKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFSLQQQVVELQAELAYVQARLSILNRISEDPQFQQPQSTSMYFDHPPLQHDQYHPTPFELSNIGNPSYYSYHQELHDQELQDLP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02531 182 ProSiteProfiles LOB domain profile. 15 119 IPR004883 -
Vivi6g02531 182 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 149 - -
Vivi6g02531 182 Pfam Lateral organ boundaries (LOB) domain 16 116 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02531 Vivi-Chr6 108066405 108067532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02531 19 161 AS2 family AT2G45410 63.194 3.49e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi6g02531 LOB 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02531 - - mtr:11426685 290.041