Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02527 ATGGAAGGGAGAGAAGGTAGCAGCACTGGAGTTACGGTGATAGGAGCGGAAGCTCCGTCGGCGTATCATATGGCACCGAGGAGTGAAGCTCCGAGCCAGCACGGTGCTGTTTCTGAATCAGGAGGTGGAGGAGTTATTGGTGTCTCGCCGGTGAGCTTGGGAATGGATGGAGGGACAATTAAGAAGAAAAGAGGTAGGCCAAGGAAATACGGGCCAGACGGATCGGTTTCTGGTGTGGCGTTATCGCCTTTGCCGATCTCGTCTTCAGGTCCTTTTTCGAATGAGTTTTCGTCGGGGAAGCAAGGGAGACCGAAGGGGATGGAGTTCAAGCAGGCGAAGAAAGTCGGAGTTGATCCTTTTGGTGACTCGGTTGGGACCAACTTTATGCCGCATATCATTACCGTAAACGCTGGCGAAGACATTACAATGAAGGTTATATCGTTTTCCCAGCAAGGACCGCGAGCTATATGCATCTTATCCGCCAGCGGTGTGATTTCAAACGTTACACTTCGCCAGCCTGATTCGTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCGCTGTCTGGATCGTTCATGCCTACCGAGAGTCAAGGAACGAGAAGCCGGTCCGGTGGAATGAGTGTTTCTTTGTCAAGCCCCGACGGTCGTGTTGTAGGCGGTGGAGTTGCCGGTCTTCTAGTAGCCGCCAGTCCTGTGCAGGTGGTGGTTGGAAGTTTTCTGCCAAGTAATCAGCAAGACCAGAAACCAAAGAAGCCAAAATCTGATTACCCAACAGCCACCTTAACCGCGCCTATAGCAGTGTCTTCCACGCTGCCACCACCAACCAATGGCGAAAGAGAAGATGTCATGAGTGGACACATACTACAAAATTCCGGAACACTTAACTCAAACCTTACGTCTCCCTCGGCCTTTCGTCGAGAAAACTGGGTTAACATGCACTCCATGCCGGACTCAATGAAGTCTGCAACCGATATTAACATATCTTTGCCCGATAATTAA 1011 0.5074 MEGREGSSTGVTVIGAEAPSAYHMAPRSEAPSQHGAVSESGGGGVIGVSPVSLGMDGGTIKKKRGRPRKYGPDGSVSGVALSPLPISSSGPFSNEFSSGKQGRPKGMEFKQAKKVGVDPFGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKPKKPKSDYPTATLTAPIAVSSTLPPPTNGEREDVMSGHILQNSGTLNSNLTSPSAFRRENWVNMHSMPDSMKSATDINISLPDN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02527 336 MobiDBLite consensus disorder prediction 25 78 - -
Vivi6g02527 336 CDD DUF296 130 220 IPR005175 -
Vivi6g02527 336 Gene3D - 130 260 - -
Vivi6g02527 336 FunFam AT-hook motif nuclear-localized protein 1-like 130 260 - -
Vivi6g02527 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Vivi6g02527 336 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Vivi6g02527 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 247 - -
Vivi6g02527 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 309 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02527 Vivi-Chr6 107896400 107898905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02527 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.960 1.80e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02527 - - gmx:100777213 498.049