Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02508 ATGGGCAACTGTGGCACCAGAGAAGAATCCGCCGTTGTTTCCAATGCTCAAGTTCAGCAGCTACATCCTGCTGCCGGAGCTAGAAACCAAACCACCGGCGCCGGCGGCTCCATTGAACGGAAAAACTCCAGTCTCCGACATCATCTAACCGATTCCGCTTCGGATCTGAGCGAGTCGTGTTCAACGCCTCGCTGGAACAACGCTAATAATAATAATACACTTCTTTATACTCACGTTATAGCTTTCACGCTCTACGAGCTTGAAACCATAACAAAAAGCTTTCGCGCTGATTATATTTTGGGGGAAGGAGGGTTTGGTACTGTTTATAAAGGCTACATTGATGAGAATGTTAGGGTTGGACTTAAGTCTCTTCCGGTTGCGGTTAAGGTGTTGAATAAAGAAGGACTTCAAGGTCATCGAGAGTGGCTCACGGAGGTGAATTTTCTTGGACAGCTTAGGCATCCTAATCTTGTGAAGTTGATTGGTTACTGCTGTGAGGATGATCATAGGCTGCTTGTTTATGAATTCATGTTTCGAGGAAGTCTCGAGAATCATCTATTCCGAAAGGCAACTGTTCCTTTAACATGGGCTACAAGAATGATGATTGCTCTTGGTGCTGCCAAAGGGCTTGCCTTTCTCCATAATGCTGAAAGGCCAGTAATCTATCGTGACTTCAAGACGTCTAATATATTATTGGACTCTGACTATACAGCCAAACTTTCTGATTTTGGGTTAGCTAAAGCAGGGCCTCAAGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACAGGCCACCTAACAGCTAGGAGTGATGTATATAGCTTCGGGGTTGTTCTTTTGGAGCTTTTAACTGGAAGGAAGTCCGTTGACAAGACCAGACCAGGGAAGGAACAAAGCTTGGTAGATTGGGCACGCCCAAAGCTCAATGACAAGAGAAAGCTCCTGCAAATAATTGATCCTAGATTGGAGAATCAGTATTCAGTTCGGGCGGCACAGAAAGCGTGTAGCCTAGCTTACTACTGCTTGAGTCAAAATCCCAAAGCAAGACCACTAATGAGCGATGTAGTCGAGACATTGGAACCCTTACAAAGTTCTACTGTTGGTGCAGACGAAGTCTCATTATCAGGATCGAATAGTGGGAGTGGCGGTCCTTTTGCCATGAACAAAATCTCCGATTACCGAATGCGTCACAAGTTTTCAAATAACGTTGGCCCAGGTGCTACTTGTCGGTCTCCAAACCCAAACTGCTCACCAGGTCCTGCTGCAGCTTTACGGGTCAGATGA 1320 0.4583 MGNCGTREESAVVSNAQVQQLHPAAGARNQTTGAGGSIERKNSSLRHHLTDSASDLSESCSTPRWNNANNNNTLLYTHVIAFTLYELETITKSFRADYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLTWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSTVGADEVSLSGSNSGSGGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGPAAALRVR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02508 439 Gene3D Phosphorylase Kinase; domain 1 55 176 - -
Vivi6g02508 439 FunFam Serine/threonine-protein kinase BIK1 61 176 - -
Vivi6g02508 439 PANTHER OS01G0588500 PROTEIN-RELATED 59 375 - -
Vivi6g02508 439 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02508 439 Gene3D Transferase(Phosphotransferase) domain 1 177 387 - -
Vivi6g02508 439 MobiDBLite consensus disorder prediction 416 439 - -
Vivi6g02508 439 CDD STKc_IRAK 100 374 - -
Vivi6g02508 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vivi6g02508 439 SUPERFAMILY Protein kinase-like (PK-like) 63 371 IPR011009 -
Vivi6g02508 439 ProSitePatterns Protein kinases ATP-binding region signature. 100 129 IPR017441 GO:0005524
Vivi6g02508 439 MobiDBLite consensus disorder prediction 1 42 - -
Vivi6g02508 439 MobiDBLite consensus disorder prediction 8 39 - -
Vivi6g02508 439 FunFam Probable serine/threonine-protein kinase PBL8 177 389 - -
Vivi6g02508 439 Pfam Protein tyrosine and serine/threonine kinase 99 371 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02508 Vivi-Chr6 107335737 107339158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02508 58 384 Glycoside Hydrolase AT3G07070 51.652 1.91e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi6g02508 PK_Tyr_Ser-Thr 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02508 - - gmx:102662348 785.793