Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02480 ATGGCTGCAAATTCTGAGAATATACGGTCCTTGTCATTGCGGTTGAATTCACAAATTCATGGTGGTGCTGATTCAATATCTATTCCAGTGTGTTCTCTTTGCCACAACATCTTACCAATTGATGATGAGATAACAAGTGATCCTGCAATGCGTGGTGTATGCGGTGACTGTGCTGATTCTCTATGTGTTCCACTGTGTTCACTTTGCCGCAAGGCCTTATCGCCTGATGATGAGATAACCGGTGATCTCGCAATGGGTGGTGTATGCGGTGACTGTAAATTTCTATTGCTTGAAGACTTTGGGAATCATACAGTTTCTCAAAGGAGGCTGAGAGAAAGATTCAGGCACAGTAGCTCTGAATCGGTTCCGAATATTGGTGGACAAAACCATTCCACTGCATCTGTAGAGGAAGATCAAGTTGTAGATGGTGACAACCCTGCATGGTCATTGCAGAATGCTAGTGCAAATACTACTCCTAGTCGTTCTAGAAGCTGGAGGCATGTTCTCTCGGATACTGACAGTGATGGTTTTGATAATTGGCGTTCTCATTATGGTGAAAATGAATCAAATGCAAGTTTTAGACAGTATATGGTTCCCCAAAGTGAGGTCGATTCTTTTTCTTTCAGTGCTTATGGAGGTGACTCGGATATCTCTATCGATAGACAGAGTTTTGTTGGCACTGGAATTTTTAATTTACCGGACGAGGGAGATGAGTTTGATACTGACACTGACATCGATCCAATGCATGCTGGCCTCAGCCAATGGAACTCGGACAATATGGAAGACGAGGAAGAGGATGACGAGGAAGAGGAGGGCGAGGAGGAAAGAGAATGGGAACTACCCGAGGTTGATGAATCTGCATCCGCTCGCCTTCAAGTTCTTTTAACCGCAAGTCCAAATGAGAGCCGAAGCCGCATTAATTGGGAACAAAGGTTTAATGCCACTGAAACTGAGGGGATATTTAGCCAGATAATCAGGGAAACCTGGTTAGCTTTGGACGATGCTGAATTACCTAATGAAGCTAATTTCGGAGACTTCATGGATACCAGACGCTTCAATGATCTGCTTGATCATCTCGCTGACAATGACCCTTCAAGACGAGGAGCACCTCCTGCTGCTGCATCTTTTGTAAATAATCTACCCCGTGTAGTCATTAGCAAGGAACACGAGAAACACGAAGAACTAGTTTGTGCCATCTGCAAGGATGTTTTGGCTCTTGGAACTGAAGTAAATCAGCTCCCTTGTTCTCACCTTTACCATTGTCATTGCATTTTGCCGTGGTTGAGGACACGTAATTCGTGCCCTCTTTGTCGCTATGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAGAACAACGATGGTAGAAATGTGATCAATGAGAGACAGCAGCTACTACACGTTATGGATGATAGTTTCTCTGATATTTCTGATGAAGCTGAAGCGAGTGAAGAAGATGATACCACCACTACTCACGAAACTCTGAATTCTTCTGCAACAGAAGGTAGTAGGGGAAGATGGCTGTTTCTTGCTGCAGCTCCGACTGTTAGTCTAGTAGGTATGGTTATTGTACTGTGGCTAGGTAGAAACTCTCGGAGTGAAGGGACTAGACATTCGAATACTCGCTTGGCTGCGCAAAATCAGCAAGCTTTTAATGGTTCTCGAAACCGAGGGGAGACTAGACACAGAAGATGGTGGTGTCCATTCTAA 1716 0.4441 MAANSENIRSLSLRLNSQIHGGADSISIPVCSLCHNILPIDDEITSDPAMRGVCGDCADSLCVPLCSLCRKALSPDDEITGDLAMGGVCGDCKFLLLEDFGNHTVSQRRLRERFRHSSSESVPNIGGQNHSTASVEEDQVVDGDNPAWSLQNASANTTPSRSRSWRHVLSDTDSDGFDNWRSHYGENESNASFRQYMVPQSEVDSFSFSAYGGDSDISIDRQSFVGTGIFNLPDEGDEFDTDTDIDPMHAGLSQWNSDNMEDEEEDDEEEEGEEEREWELPEVDESASARLQVLLTASPNESRSRINWEQRFNATETEGIFSQIIRETWLALDDAELPNEANFGDFMDTRRFNDLLDHLADNDPSRRGAPPAAASFVNNLPRVVISKEHEKHEELVCAICKDVLALGTEVNQLPCSHLYHCHCILPWLRTRNSCPLCRYELPTDDKDYEEGKQNNDGRNVINERQQLLHVMDDSFSDISDEAEASEEDDTTTTHETLNSSATEGSRGRWLFLAAAPTVSLVGMVIVLWLGRNSRSEGTRHSNTRLAAQNQQAFNGSRNRGETRHRRWWCPF 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02480 571 CDD RING-H2_PA-TM-RING 396 438 - -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 119 136 - -
Vivi6g02480 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 444 IPR013083 -
Vivi6g02480 571 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 264 442 - -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 245 283 - -
Vivi6g02480 571 Pfam Ring finger domain 397 438 IPR001841 -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 480 501 - -
Vivi6g02480 571 ProSiteProfiles Zinc finger RING-type profile. 397 438 IPR001841 -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 112 136 - -
Vivi6g02480 571 SMART ring_2 397 437 IPR001841 -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 535 557 - -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 535 559 - -
Vivi6g02480 571 Coils Coil 257 277 - -
Vivi6g02480 571 FunFam E3 ubiquitin-protein ligase RING1-like 358 444 - -
Vivi6g02480 571 SUPERFAMILY RING/U-box 378 444 - -
Vivi6g02480 571 MobiDBLite consensus disorder prediction 258 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02480 Vivi-Chr6 106642395 106645365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02480 58 571 C3H Transcription Factor Family AT5G01980 41.316 3.58e-107 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02480 - - psat:127127254 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02480 6 106642395 106645365 Vivi6g02480 6 106642395 106645365 ECH