Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02477 ATGGAAGGGAGTGGGGACATGTTCAGAGGCTCTCCGGTTGCCGGATCATCATCAGCATCTTCTTCATCGTCAATTTCCAGAAGATACGGATTCCCGTCAGCAGCCAGCATAATTCAAGCACCGTTATCAGCGCTTCTGGAATATTCTGGTATTCTTCCACCTAGGTCGAACCAGCATCAACCTAACCCCGATTCTGCCCCCAATGACGGCGAGGTTTCTATTAGGATAATCGGTTCTACTGAGCAAGATAATCACAGGGAAGAGGAGGGTACCCCACTGGTGGGGAACGATGGTTCTGGTTCTGCTACTGCGGCTGGGATGACTTCTTCCCCTTCACATGGTGATGTTGAGGGTGTTTCACGGTCTGGGAGTGGAAATGTTGATGCGGAAGCAGGTGGTGGTGGTGATGGTGTTGGTGCTAATGGGAGAGATTCTTCTTATCAGAGATATGATATTCAGCACGCTGCTAGGTGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTGGTATTCATTCGCCAACATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTTCTTTTCAAGTCAAATGACATTCTGCGTAAACAAACGGCATTGAAGGGAGAGAGGAAAATGCCCGTTTTGATTGGAATATCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTAATGTATCCGTTAGTCATGCTTCCTCCCAAAGAAATACCGCCCTTCTGGCATGCCATTTTCATCATCATGGTCAATGATACTTTGGCACGCCAGGCTGCAATGATATTCAAGTGTATATTGTTAATGTATTACAAGAATAGCAGAGGCCGCAATTATCGTAAACAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCTTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGGTTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCAGTGAAAGCATTGTCACGTAAAGAAGTACACTATGGGGCTCATGCAACATCAGAGCAGGTTGTTGCAGCCGGTGATCTTTGTGCCATTTGTCAAGAGAAGATGCATGCCCCAATCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTAA 1326 0.448 MEGSGDMFRGSPVAGSSSASSSSSISRRYGFPSAASIIQAPLSALLEYSGILPPRSNQHQPNPDSAPNDGEVSIRIIGSTEQDNHREEEGTPLVGNDGSGSATAAGMTSSPSHGDVEGVSRSGSGNVDAEAGGGGDGVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMIFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEVHYGAHATSEQVVAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02477 441 Pfam Zinc finger, C3HC4 type (RING finger) 378 421 - -
Vivi6g02477 441 CDD RING-HC_RNFT1-like 378 418 - -
Vivi6g02477 441 MobiDBLite consensus disorder prediction 79 142 - -
Vivi6g02477 441 MobiDBLite consensus disorder prediction 96 119 - -
Vivi6g02477 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 428 IPR013083 -
Vivi6g02477 441 ProSitePatterns Zinc finger RING-type signature. 395 404 IPR017907 -
Vivi6g02477 441 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 18 441 IPR044235 GO:0061630|GO:1904294
Vivi6g02477 441 MobiDBLite consensus disorder prediction 11 28 - -
Vivi6g02477 441 MobiDBLite consensus disorder prediction 1 28 - -
Vivi6g02477 441 SUPERFAMILY RING/U-box 371 423 - -
Vivi6g02477 441 SMART ring_2 380 417 IPR001841 -
Vivi6g02477 441 ProSiteProfiles Zinc finger RING-type profile. 380 418 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02477 Vivi-Chr6 106621502 106626908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02477 3 441 C3H Transcription Factor Family AT5G01960 70.404 0.0 625
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02477 6 106621502 106626908 Vivi6g02477 6 106621502 106626908 ECH