Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02439 ATGTCTTCCCTACTCTCTGCCACAACTACACTTCAACATACTCATAACAAAATCTGCTTCTCCCATCTAAAACTCACCACCCCATGTAACAATTCTTTCTTAACAAAACATTTCAACCATCATTCTATAAGGTGTAATGCATTTTTCGATATCGTCCCTAAAGAAATATTATTGAGCAGCACTTTTTATTTGGATAAGTTTCAGGCTGTGAGTGAGGATTTATCTGACATGCAAAGGTTAGAGATTTTGCTCTTTGTTGGGGTGACATGGTTTTACTTAACTGCAAGACCAGGTGTTCTTTTTGGTGCCATTGATGCATACCTTTTGGCTCCAATGCAATTGGTTTTGGATAGTTTATCTGGACGGAGAAGCATGAAGAGGAGTGATTTCTTGATCGGCGATAAGTTAGGCGAAGGGTCGTTCGGTGTTGTTTATTCAGCGGTTTTGGCAACAAAGAATGTGGATGCAAAAGAGAGGATTCGGAAGAATGGAAGAGGTAAGATGGATGCTAATTCTAAGGATAAAGTCATTCTTAAAAAGGTGAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTTTGAGGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTTCTTGGAAGTTTTGTAGCAGATAAAAGCAATTCTCAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGACCGTACTCTTGGTGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAGCGCGTCGTGTTCGGAAGTGTCTTGCAAGGCGTAGAATCTTCTAAAAGAAACACACTTATTATCAAGCAAATAATGCGCCAAATCGTTACATCTCTTAAGAAAATTCATGATACTGGCATTGTTCATAGGGATGTAAAGCCTTCCAACTTGGTTGTTACAAAACAAGGACAGATTAAACTCATTGATTTCGGTGCAGCAACAGATCTTAGAATCGGAAAAAATTTTGTTCCTGAATATACACCTTTGGATCCTGATTACTGTCCACCCGAACTATATGTGCTGCCACAAGAAACACAAAGTCTTCCTCCTGAGCCTATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTCTTTGATATGTACTCTGCTGGAATTGTACTCCTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAAAATTTCAATATGGAAATGAGAACATGCAGATACGATTTGAACAAATGGAGGGACTCTACTCGCATGAAGTCTAACTTCCAAATCCTTGATAGTGATTCCGGTAGAGGCTGGGACTTAGCGTCAAAGCTTATCTCCGAAAGAAGAAGGCGTTTATCGGCCGCTTCTGCTTTGAGGCATCCTTATTTTCTTCTAAGTGCTGATCAAGCAGCCGCCGTTCTTTCAAAATTCAGCTTTAGCACAAAGTGA 1458 0.3999 MSSLLSATTTLQHTHNKICFSHLKLTTPCNNSFLTKHFNHHSIRCNAFFDIVPKEILLSSTFYLDKFQAVSEDLSDMQRLEILLFVGVTWFYLTARPGVLFGAIDAYLLAPMQLVLDSLSGRRSMKRSDFLIGDKLGEGSFGVVYSAVLATKNVDAKERIRKNGRGKMDANSKDKVILKKVKVGIEGAKEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEGDRTLGDYMTDKNFPSNLERVVFGSVLQGVESSKRNTLIIKQIMRQIVTSLKKIHDTGIVHRDVKPSNLVVTKQGQIKLIDFGAATDLRIGKNFVPEYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNMEMRTCRYDLNKWRDSTRMKSNFQILDSDSGRGWDLASKLISERRRRLSAASALRHPYFLLSADQAAAVLSKFSFSTK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02439 485 Gene3D Phosphorylase Kinase; domain 1 117 237 - -
Vivi6g02439 485 CDD STKc_SNT7_plant 134 466 - -
Vivi6g02439 485 ProSiteProfiles Protein kinase domain profile. 130 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02439 485 SUPERFAMILY Protein kinase-like (PK-like) 126 467 IPR011009 -
Vivi6g02439 485 Pfam Protein kinase domain 277 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02439 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Vivi6g02439 485 SMART serkin_6 130 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02439 485 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Vivi6g02439 485 Gene3D Transferase(Phosphotransferase) domain 1 266 471 - -
Vivi6g02439 485 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 64 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02439 Vivi-Chr6 106029436 106031523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02439 256 323 MAP Kinase Kinase Kinase AT4G08470 41.176 5.82e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vivi6g02439 Pkinase 7.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02439 - - gmx:100795624 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02439 6 106029436 106031523 Vivi6g02439 6 106029436 106031523 ECH
Vivi7g03248 7 97735674 97738347 Vivi6g02439 6 106029436 106031523 PCT