Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02438 ATGGTTTCCTCTCAGTTTTCTGGTATGAGTGTGGCTGGCATGTGTAAACCGTTGCTCTTTCCTGTTAATGATCCTGGTAGTGCGACCACGGATCAAGTTGAGATGGATTTCTCTGATGTTTTTGGTCCTCTTACTGTTGAAGTCAATAATAATTTTTCTTTTGACTCTGTTGATGAATCGAGCGAGTTGGTTTATGATGACCCGGAAGTTATCGTTACTCGTTCGCATTCTCTGGTTGGTCCTTCTAATTGTGTTAGTCAGTCACTCAAACTCAGTAAGCTCACCATTCATGAGTCTGACTCGGACAATTTGTTGGAGATAGTGGAGAGTGTTAGTGAAGAGACCATTGAAGACGTCAAAGAGGTTATCGATGAGGAATCTTTGAATGATGAAGACAGGAGCCTCGTGGAGATCCAGAGAGTTAGCATTGAAGATTTTGAGGTTTTGAAGGTTGTGGGGCAGGGTGCGTTTGCAAAAGTATATCAGGTGAGGAAAAAGGGCACTTCGGAAATATATGCTATGAAGGTTATGCGGAAGGATAAGATTATGGAGAAAAACCATGCCGAATACATGAAAGCTGAGAGGGAGATTTTGACAAAGATTGAGCACCCCTTTGTTGTGCAACTTAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTGGATTTTGTAAATGGGGGCCATCTCTTCTTTCAGCTATATCACCAGGGCCTTTTCAGAGAGGATCTTGCACGCATATATGCCGCCGAGATTGTTTCTGCAGTTTCCCATCTCCACTCAAAGGGAATAATGCACAGAGATCTAAAACCTGAAAATATCCTTATGGATGTCGATGGCCATGTTATGTTGACTGATTTCGGCTTAGCAAAACAATTTGAAGAAAGTACAAGATCTAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAGATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGCGTCTTACTGTTTGAGATGCTCACTGGGAAGCCGCCCTTCAGTGGTGGGAACCGTGAGAAGATTCAGCAGAAGATAGTGAAAGATAAGATTAAGCTGCCAGGATATTTGTCAAGTGAAGCACATGCACTGTTGAAAGGGCTGCTACAGAAGGAAGCACCAAAGCGGTTGGGTTGTGGAGCTAAAGGGTTTGCGGAAATTAAAGGGCACAAGTGGTTCAAACCAATCAATTGGAAGAAGTTGGATGCACGTGAAATCCAACCAAGCTTTAGGCCAGAAGTAGCCGGAAAGTACTGTGTTGCAAACTTTGAGAAGCGCTGGACTGATATGCCTGTTGTTGATTCACCAGCTGCAAGCCCAAATGGTGGAAATCCCTTCAAGGACTTCTCTTATGTCAGACCTGCAGCCTCTTTTCTTCAACAGAATAGCCCTGCTTGCTAA 1428 0.4349 MVSSQFSGMSVAGMCKPLLFPVNDPGSATTDQVEMDFSDVFGPLTVEVNNNFSFDSVDESSELVYDDPEVIVTRSHSLVGPSNCVSQSLKLSKLTIHESDSDNLLEIVESVSEETIEDVKEVIDEESLNDEDRSLVEIQRVSIEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAEREILTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSKGIMHRDLKPENILMDVDGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFSGGNREKIQQKIVKDKIKLPGYLSSEAHALLKGLLQKEAPKRLGCGAKGFAEIKGHKWFKPINWKKLDAREIQPSFRPEVAGKYCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAASFLQQNSPAC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02438 475 SUPERFAMILY Protein kinase-like (PK-like) 143 462 IPR011009 -
Vivi6g02438 475 SMART pkinase_C_6 403 462 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi6g02438 475 FunFam Non-specific serine/threonine protein kinase 226 421 - -
Vivi6g02438 475 Pfam Protein kinase C terminal domain 424 460 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vivi6g02438 475 ProSiteProfiles Protein kinase domain profile. 146 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02438 475 Gene3D Transferase(Phosphotransferase) domain 1 226 421 - -
Vivi6g02438 475 Pfam Protein kinase domain 146 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02438 475 PANTHER RIBOSOMAL PROTEIN S6 KINASE 111 465 - -
Vivi6g02438 475 FunFam Non-specific serine/threonine protein kinase 143 250 - -
Vivi6g02438 475 Gene3D Phosphorylase Kinase; domain 1 143 443 - -
Vivi6g02438 475 ProSiteProfiles AGC-kinase C-terminal domain profile. 403 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi6g02438 475 SMART serkin_6 146 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02438 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vivi6g02438 475 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Vivi6g02438 475 CDD STKc_AGC 152 402 IPR045270 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02438 Vivi-Chr6 106024833 106028233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02438 1 472 AGC Kinase Gene Family AT3G08720 68.595 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vivi6g02438 Pkinase 1.7e-75 CL0016