Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02420 ATGAGGGCTCTAAGAGTTCATGGATATGTCTTGTCTGTTTCATTTTGTTTCATCATCTTCATGGCAGTCTCACAAAAAACAGATCCTTCAGAAGTGAAAGCACTGATAGGGATCAAGAATAGTTTAATTGATCCAATGGGCAAACTGAGGAATTGGAATAAGGGCGATCCGTGTACACGACACTGGACTGGAGTTTGGTGTTTTGATAAGAAGGGTGATGATGGTTACTTCCATATCCGCGAGCTCTACCTGATGACTATGAATCTCTCGGGAACTCTAGCACCGCAGCTTGGTATGCTTTCACATCTCAACATAATGGATTTCATGTGGAACAATCTGACTGGCACAATACCAAAAGAAATCGGACACATTACATCATTGAAACTCTTGCTCTTGAATGGAAATAAATTATCTGGCAGTTTACCAGATGAGCTTGGCAACCTTATGAATATGAATAGACTCCAACTAGACGAAAACCAACTGTCGGGTTCTGTGCCAGAATCGTTAGCGAATTTGGTCAACATTAGACACCTTCACATGAACAACAACTCGTTCACTGGTCAACTTCCATCCAAACTTTCAAACCTATCCAATCTTATGCATTTGCTTTTGGACAACAATAACTTATCTGGATATCTTCCACCAGAATTCTCCAAGTTACACAGTTTGGAAATACTGCAACTCGATAACAATAATTTCAGCGGGAACGGAATTCCTTCTACCTATGAAAATTTACCCAAGCTTGTAAAACTGAGTCTGAGAAATTGCAGTCTACAAGGAGCTATTCCTAATTTAAACAAAATACCAAGTCTTAAATATTTGGATCTTAGCTGGAATCAGTTTACTGGACGTATACCATCGAATAATCTTTCAACCAACATGACAACTGTTGATCTGTCCCATAATAAACTCAATGGATCAATTCCTCGAGGCGGAGTATATCCTTATCTTCAAAGATTGCAACTACATAACAATTTACTGTCTGGCTCCTTTCCTGCTACCATATGGCAGAACATATCCTTCAGCGGGAAGGCGAAGCTTATAATTGATTTTCATAACAACTTACTTTCTGACGTTTCCGGAGATCTGAATCCCCCGAAAAATGTTATCTTAAGACTTTCTGGAAATCCCGTTTGCAAGAATTCCAACATACAAAGAATTGGTCAATATTGCGGTAACGAAGGGCGTCAAGTAGATGAAGAATTTACGTCACCCGCTGTCTGCCCCATTCAATCTTGTCCAGTAGATAATTTCTTTGAATATGCACCCTCACCCCCGCCAGATCCTTGTTTTTGTGCAGCGCCTCTAAGAATCGGATATAGGCTTAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTATAAAACTAGTTTCGAATCATACATGACCAAGTCCTTAAACTTAAACTTCAATCAGTTATCGATAGATTCTTATGAATGGGAAGAGGGGCCTCGTCTCAGAATGTATCTGAAAATTTTCCCTTCATTCAACGATTCCCAGTCTCACACATTCAACACAAGTGATGTCATGCGCATCGCTAGCATCTTTTCATCATGGAGATTTCCTCACACGGTTTTTTTCGGACCATTTGAACTTCTGAATGTCACTCTTCTCGGACCTTATGCAAATATAATTATTAACACAGAGAGCGACAGAAAGAGAAAAACAGGTATCATTGTTGCTACTATAATCGGAGCCGTTGCTGCTGTTTTAGCAATAACTGCAATAGCCATGCTCTTACTTTTTAGAAGAAATTCAAAATACAAGCACTTGATTTCCAGGAAACGCATGTCCTCTAATATAAATATCAAAATAGATGGTGTGAAAGCATTCACTTTGAAAGAGTTGACTCACGCCACTAACAGATTTGATATCTCGGCTAAAGTTGGTGAAGGTGGTTACGGAAATGTCTATAAGGGCGTTTTATCTAATGAAACGTTTGTTGCCGTTAAGCGAGCAGGAGAAAATTCATTACAAGGACAAAAAGAGTTCTTGACTGAGATTGAACTTTTATCGAGGTTACATCATCGAAATCTTGTCACCCTAATGGGCTACTGTGACGAAGAAGGAGAGCAGATGCTGGTTTATGAATTCATGCCCAACGGCACACTGAGAGAATGGATTTCTGGTAAAAAGAAACAATTCAATAAAGGACTTAGCTTTTGCATGAGATTACGGATTGCAATGGGTGCAGCCAAAGGAATACTATATCTACATACAGAGGCTAACCCTCCTATATACCATAGAGATATTAAAGCGAGTAACATACTTCTCGACTCCAAGTTTACAGCCAAAGTGGCTGATTTTGGACTGTCGCGGCTTATACCATACTCGGATGAAGAGGGGACTGTACCTAAATATGTGTCAACAGTTGTGAAGGGAACACCGGGTTACCTGGATCCTGAATATATGATGACTCATAAGTTAACTGATAAAAGCGATGTATACAGTTTAGGAATTGTGTTATTAGAGCTTTTGACTGGCATGCATCCGATATCACGAGGGAAAAACATTGTTCGCGAGGTTAATCTGGCTTGTCAAAATGGCACGATGGATTCGATTATAGATGCTAGAATGGGTGAGTATCCATCTGAATGCTTAGACAAGTTCTTAGCTCTGGCTCTCAGTTGCTGTCATGACCATCCAGATGAGAGACCATCAATGTTAGATGTGGTGAGAGAATTGGAAGACATTATTGGTTTGTTACCTGAAACTGAGAGTGAAATTTGTTTATCAGATGTTTCTTTAGATAATTCTGGTAAAATTGTGCCCTCGTCTTCATCATCGGCAACAACATCAGGAAACATTATGACAAGAAAGGACCAGCAGCACATGTCCGCAGATGTGTCTGGAAGTGATCTTATCAGTGGCTTCGTTCCTACTATTGTTCCTCGTTGA 2895 0.3983 MRALRVHGYVLSVSFCFIIFMAVSQKTDPSEVKALIGIKNSLIDPMGKLRNWNKGDPCTRHWTGVWCFDKKGDDGYFHIRELYLMTMNLSGTLAPQLGMLSHLNIMDFMWNNLTGTIPKEIGHITSLKLLLLNGNKLSGSLPDELGNLMNMNRLQLDENQLSGSVPESLANLVNIRHLHMNNNSFTGQLPSKLSNLSNLMHLLLDNNNLSGYLPPEFSKLHSLEILQLDNNNFSGNGIPSTYENLPKLVKLSLRNCSLQGAIPNLNKIPSLKYLDLSWNQFTGRIPSNNLSTNMTTVDLSHNKLNGSIPRGGVYPYLQRLQLHNNLLSGSFPATIWQNISFSGKAKLIIDFHNNLLSDVSGDLNPPKNVILRLSGNPVCKNSNIQRIGQYCGNEGRQVDEEFTSPAVCPIQSCPVDNFFEYAPSPPPDPCFCAAPLRIGYRLKSPSFSYFPPYKTSFESYMTKSLNLNFNQLSIDSYEWEEGPRLRMYLKIFPSFNDSQSHTFNTSDVMRIASIFSSWRFPHTVFFGPFELLNVTLLGPYANIIINTESDRKRKTGIIVATIIGAVAAVLAITAIAMLLLFRRNSKYKHLISRKRMSSNINIKIDGVKAFTLKELTHATNRFDISAKVGEGGYGNVYKGVLSNETFVAVKRAGENSLQGQKEFLTEIELLSRLHHRNLVTLMGYCDEEGEQMLVYEFMPNGTLREWISGKKKQFNKGLSFCMRLRIAMGAAKGILYLHTEANPPIYHRDIKASNILLDSKFTAKVADFGLSRLIPYSDEEGTVPKYVSTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVLLELLTGMHPISRGKNIVREVNLACQNGTMDSIIDARMGEYPSECLDKFLALALSCCHDHPDERPSMLDVVRELEDIIGLLPETESEICLSDVSLDNSGKIVPSSSSSATTSGNIMTRKDQQHMSADVSGSDLISGFVPTIVPR 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02420 964 Gene3D Phosphorylase Kinase; domain 1 592 697 - -
Vivi6g02420 964 SUPERFAMILY L domain-like 27 287 - -
Vivi6g02420 964 Gene3D Transferase(Phosphotransferase) domain 1 698 907 - -
Vivi6g02420 964 Pfam Protein kinase domain 624 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02420 964 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Vivi6g02420 964 SUPERFAMILY L domain-like 238 385 - -
Vivi6g02420 964 Gene3D Ribonuclease Inhibitor 191 289 IPR032675 -
Vivi6g02420 964 SMART serkin_6 622 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02420 964 CDD STKc_IRAK 628 897 - -
Vivi6g02420 964 PANTHER RECEPTOR-LIKE PROTEIN 55 38 896 - -
Vivi6g02420 964 SUPERFAMILY Protein kinase-like (PK-like) 607 911 IPR011009 -
Vivi6g02420 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Vivi6g02420 964 FunFam Leucine-rich repeat protein kinase family protein 586 697 - -
Vivi6g02420 964 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 698 909 - -
Vivi6g02420 964 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Vivi6g02420 964 CDD TM_EGFR-like 554 589 - -
Vivi6g02420 964 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vivi6g02420 964 ProSiteProfiles Protein kinase domain profile. 622 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02420 964 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Vivi6g02420 964 Gene3D Ribonuclease Inhibitor 290 379 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02420 Vivi-Chr6 105628958 105635146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02420 5 911 Receptor kinase-like Gene Family AT5G01950 59.146 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vivi6g02420 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02420 - - gmx:100815005 1372.45