Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02415 ATGTACAAGGGAAGATTTTGCACTTCTGGTGGGATTAAGGTTCCACTTGGATATGTCGAAAAGGATCCATCTGGTCGATACGGGCGCTATAGGGACATTCTTGGGAGAGGAGCAATGAAAACTGTGTATAGAGCATTTGATGAGTTCCTTGGGATAGAAGTTGCTTGGAACCAAGTCAAGCTTGGTGATGTTTTTCATTCACCTGAGCAACTTCAACGCCTTTATTCAGAAGTTCATCTCCTTAAGCACCTCCACCATAAATCCATGATGATCTTCTATGGTTCTTGGATTGATCTCAATGGCAAAACCTTCAACTTCATCACTGAATTGTTCACTTCAGGCACACTTAGAGAGTACAGGCAAAAGTATAAGAGAGTAGATATTCAAGCATTGAAGAATTGGACACGCCAAATTCTAAGTGGTTTGGAGTATTTACACACCAATAATCCTCCTGTGATCCATAGAGACCTCAAATGTGATAACATATTTGTCAATGGACATAAAGGAGAGATCAAGATTGGTGACTTAGGCCTTGCAGCTATACTTTGCAAATCCCAACTTGCTCAAAGTGTCATAGGTACGCCAGAGTTTATGGCACCAGAACTATACGAAGAGAAATACAATGAGTTAGTAGATATATATTCGTTCGGAATGTGTATGATAGAGATGCTTACTCTCGAGTTTCCTTACAATGAGTGTTCTAACCCAGCTCAAATATACAAGAAAGTAACATCGGGAAAGCTACCAAATGCATTTTTCAGAATCAAAGATTTAGAAGCCCAAAGGTTTGTGGGAAGATGTTTGGCACATGTCTCAAAGAGACCATCTGCTAGGGAATTATTGTTGGATCCATTTTTAGACACAGAAAAAGTTGAAGTGTCATTGCTAAACACAACTACAAATCAAACTCTCAAAGTTAACTCCACTCAAGCACTTGCCAATTATAAACATCTTTCTATAAGTGATCCATCAACAAGTACAAATATGAAAATCACTGGATCCATAAATGAAGATAATACAATTTTCCTTAAAGTGCGGATATGTGATGAAATAGGAAAAACAAGGCATATATTTTTTCCATTTGACACGAAGAACGACACGGCTATTAAGGTGGCAATGGAGATGGTAGAAGAACTTGAGATTAGTCATTTGGAACCATTGGAGATTGCTGCAATGATAGATAATGAGATATCAAATTTGTTTCCAACATGGATGGGGAGTCATGGCAAGTGTGAACATCAACTACAACATAGCTTTAACTACCAAGAAGATGAAGATCTTAATAACCATAATCCTTTCGTCGTATCATCGTCATCTTGTCCTTCTTCTCCTCTTGATTCTCTAAGATCAATGAACTCCTACAAGTCTTCGAGTTTCAGATATCATCATGAAGATGAGCTTGGGCAAAGAATAGAAAAAGAAGCAGCTGAAGCCAAACATAACAAGCTAACATGCATAAGATCTTGTAGATGTGGTGGAGCAAAGATGGAGGAGCATAGGAGCATGCAGCTTCAGAGATGGGAACTATTGGAAGAGGTGTACAAGAGAAGGATGTTCAACACGGTTGCTACCATGGAGGGCATTGGATTTCAACATCCAGATGGAGGTGGACATCATTGTGGCCGTTGA 1629 0.3917 MYKGRFCTSGGIKVPLGYVEKDPSGRYGRYRDILGRGAMKTVYRAFDEFLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLHHKSMMIFYGSWIDLNGKTFNFITELFTSGTLREYRQKYKRVDIQALKNWTRQILSGLEYLHTNNPPVIHRDLKCDNIFVNGHKGEIKIGDLGLAAILCKSQLAQSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIEMLTLEFPYNECSNPAQIYKKVTSGKLPNAFFRIKDLEAQRFVGRCLAHVSKRPSARELLLDPFLDTEKVEVSLLNTTTNQTLKVNSTQALANYKHLSISDPSTSTNMKITGSINEDNTIFLKVRICDEIGKTRHIFFPFDTKNDTAIKVAMEMVEELEISHLEPLEIAAMIDNEISNLFPTWMGSHGKCEHQLQHSFNYQEDEDLNNHNPFVVSSSSCPSSPLDSLRSMNSYKSSSFRYHHEDELGQRIEKEAAEAKHNKLTCIRSCRCGGAKMEEHRSMQLQRWELLEEVYKRRMFNTVATMEGIGFQHPDGGGHHCGR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02415 542 SUPERFAMILY Protein kinase-like (PK-like) 31 287 IPR011009 -
Vivi6g02415 542 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02415 542 CDD STKc_WNK 26 286 - -
Vivi6g02415 542 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Vivi6g02415 542 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Vivi6g02415 542 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02415 542 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02415 542 Gene3D Phosphorylase Kinase; domain 1 15 109 - -
Vivi6g02415 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vivi6g02415 542 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 463 - -
Vivi6g02415 542 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02415 Vivi-Chr6 105325396 105335122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02415 16 426 MAP Kinase Kinase Kinase AT3G51630 64.010 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi6g02415 Pkinase 9.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02415 K08867 - gmx:100272206 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02415 6 105325396 105335122 Vivi6g02415 6 105325396 105335122 ECH
Vivi6g02415 6 105325396 105335122 Vivi5g00912 5 19160298 19166484 PCT