Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02411 ATGAGTTTTAGAGAGAGGGATGTTGAAGTTGAAGAGACGGAATGTGAAAAATCGGTGTCTCGGGTTAACGGGTCGTTAACGGAGGCTACTGGTAGTACTACACAGTTTACGATTGATGAGAATCTTCTGGTTGATCCGAAATTGTTGTTTATTGGTTCTATAATTGGGGAAGGAGCTCATGGAAAGGTTTATCAAGGAAGATATGTAGATCGAATAGTTGCTATAAAAGTTCTGCAGCGTGGGAGCACCTCAGAAGAAAGAGCTTCACTTGAAAATCGTTTTGCACGGGAAGTTAACATGATGTCTCGTGTCCACCATGATAATCTTGTGAAGTTTATTGGAGCATGTAAAGATCCTCTAATGGTGATAGTTACAGAACTTTTACCAGGGATGTCACTGCGAAAATATTTGACAAGTATCCGACCTAAACCATTAGACCTTCACACGGCTATAAACTTTGCCCTTGATGTTGCTCGGGCCATGGATTGGCTGCATGCTAACGGGATCATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTAAAACTTGCAGATTTTGGGCTTGCAAGAGAAGAATCGGTGACTGAAATGATGACTGCAGAAACCGGAACTTACCGATGGATGGCACCGGAGTTGTATAGTACGGTAACGTTACGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGGATTGTTTTATGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCCTTCAAGATTGCAGCAAGAGAGGCCGAAAATTCCAGACGATATATCACCCGATCTTGCTTTCATCATACAATCATGCTGGGTTGA 891 0.4209 MSFRERDVEVEETECEKSVSRVNGSLTEATGSTTQFTIDENLLVDPKLLFIGSIIGEGAHGKVYQGRYVDRIVAIKVLQRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKPLDLHTAINFALDVARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKIAAREAENSRRYITRSCFHHTIMLG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02411 296 SMART serkin_6 49 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02411 296 Gene3D Phosphorylase Kinase; domain 1 37 128 - -
Vivi6g02411 296 Gene3D Transferase(Phosphotransferase) domain 1 130 292 - -
Vivi6g02411 296 SUPERFAMILY Protein kinase-like (PK-like) 39 267 IPR011009 -
Vivi6g02411 296 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 49 269 - -
Vivi6g02411 296 ProSiteProfiles Protein kinase domain profile. 49 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02411 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vivi6g02411 296 FunFam Kinase suppressor of Ras 1 38 128 - -
Vivi6g02411 296 ProSitePatterns Protein kinases ATP-binding region signature. 55 76 IPR017441 GO:0005524
Vivi6g02411 296 Pfam Protein kinase domain 53 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02411 296 CDD STKc_MAP3K-like 55 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02411 Vivi-Chr6 105246914 105249906 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02411 37 289 MAP Kinase Kinase Kinase AT5G01850 74.021 5.42e-146 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi6g02411 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02411 - - pvu:PHAVU_008G083700g 461.07