Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02409 ATGAGTTTTAGAGAGAGGGATGTTGAAGTTGAAGAGACGGAATGTGAAAAATCGGTGTCTCGGGTTAACGGGTCGTTAACGGAGGCTACTGGTAGTACTACACAGTTTACGATTGATGAGAATCTTCTGGTTGATCCGAAATTGTTGTTTATTGGTTCTATAATTGGGGAAGGAGCTCATGGAAAGGTTTATCAAGGAAGATATGTAGATCGAATAGTTGCTATAAAAGTTCTGCAGCGTGGGAGCACCTCAGAAGAAAGAGCTTCACTTGAAAATCGTTTTGCACGGGAAGTTAACATGATGTCTCGTGTCCACCATGATAATCTTGTGAAGTTTATTGGAGCATGTAAAGATCCTCTAATGGTGATAGTTACAGAACTTTTACCAGGGATGTCACTGCGAAAATATTTGACAAGTATCCGACCTAAACCATTAGACCTTCACACGGCTATAAACTTTGCCCTTGATGTTGCTCGGGCCATGGATTGGCTGCATGCTAACGGGATCATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTAAAACTTGCAGATTTTGGGCTTGCAAGAGAAGAATCGGTGACTGAAATGATGACTGCAGAAACCGGAACTTACCGATGGATGGCACCGGAGTTGTATAGTACGGTAACGTTACGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGGATTGTTTTATGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCCTTCAAGCAAGAGAGGCCGAAAATTCCAGACGATATATCACCCGATCTTGCTTTCATCATACAATCATGCTGGGTTGAAGATCCAAACATGAGACCAAGCTTTAACCAAATCATCCGAATGCTCAATGCGTTTCTCTTCACACTCTCGCCACTATCTCCTCCCTTACCAGAACCCGACAATGAACCAGAGGCGGCTTCAACTAGTAACGGCAATGGTGCCATTACTGAGTTTTCTGCCCGGAACAAAGGAAAGTTTGCGTTTCTTCGCCACCTGTTTTCTTCGAAAAGGATAAAAAACTAA 1107 0.4264 MSFRERDVEVEETECEKSVSRVNGSLTEATGSTTQFTIDENLLVDPKLLFIGSIIGEGAHGKVYQGRYVDRIVAIKVLQRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKPLDLHTAINFALDVARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPKIPDDISPDLAFIIQSCWVEDPNMRPSFNQIIRMLNAFLFTLSPLSPPLPEPDNEPEAASTSNGNGAITEFSARNKGKFAFLRHLFSSKRIKN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02409 368 CDD STKc_MAP3K-like 55 310 - -
Vivi6g02409 368 FunFam Kinase suppressor of Ras 1 38 128 - -
Vivi6g02409 368 Gene3D Phosphorylase Kinase; domain 1 37 128 - -
Vivi6g02409 368 Pfam Protein tyrosine and serine/threonine kinase 51 310 IPR001245 GO:0004672|GO:0006468
Vivi6g02409 368 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672|GO:0006468
Vivi6g02409 368 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672|GO:0006468
Vivi6g02409 368 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Vivi6g02409 368 PRINTS Tyrosine kinase catalytic domain signature 237 259 IPR001245 GO:0004672|GO:0006468
Vivi6g02409 368 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 49 311 - -
Vivi6g02409 368 FunFam serine/threonine-protein kinase HT1 130 322 - -
Vivi6g02409 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vivi6g02409 368 ProSitePatterns Protein kinases ATP-binding region signature. 55 76 IPR017441 GO:0005524
Vivi6g02409 368 SMART serkin_6 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02409 368 SUPERFAMILY Protein kinase-like (PK-like) 47 334 IPR011009 -
Vivi6g02409 368 Gene3D Transferase(Phosphotransferase) domain 1 131 319 - -
Vivi6g02409 368 ProSiteProfiles Protein kinase domain profile. 49 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02409 Vivi-Chr6 105246679 105249905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02409 37 365 MAP Kinase Kinase Kinase AT5G01850 74.504 0.0 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vivi6g02409 PK_Tyr_Ser-Thr 1.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02409 - - qsa:O6P43_016485 582.793