Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02400 ATGGCAGAAGAATCACAAATTCAAATACAAGCGACTAACAAGTCAACAAACGGCGTCGTTTTGTTTGAGAAGTACGAAATTGGTAAACTGCTCGGAGTTGGCGCGTCGGCGAAGGTGTACCACGCGACGAATGTCGAAACCGGGAAGAGCGTAGCGGTGAAAGTCATGAACAAGAAGAAACTCGTTAATGGAGGTTTCTCACCAAACATTGAGCGTGAGATCTCAATTCTCAGCCGCCTCCATCATCCTAACATCGTAAACCTCTTTGAAGTGCTCGCGTCGAAGACGAAAATTTACTTCATCATAGAATTAGCCTCCGCCGGCGAACTCTTCGAAGAGGTAGCTAAAAGAGACAAACTCACCGAAGAACACGCTAGAAAATACTTCCGGCAACTTATCTCCGCCGTGAAACACTGTCACTCTCACGGTGTTTACCACCGCGATCTCAAACTCGATAATCTCTTACTAGACGAGAATGATAATCTCAAGGTAACTGATTTCGGTTTAAGCGCGGTGAAAAACCAGATCCGTCCTGACGGTTTACTTCACACCGTTTGCGGTACACCGTCCTACGTGGCACCGGAGATCCTAGCGAAGAAAGGGTATAACGGTGCGAAAGCTGATGTATGGTCATGCGGCGTCGTTTTGTTTGCTATTACCGCGGGATATTTACCGTTCAATGATTATAATATTACCGTGCTGTATAGGAAGATTTACCGCGGTCAATTTCGGTTCCCGAAATGGTTTTCCTGTGATCTGAAGAATCTCTTATCGAGGTTGTTGGATACGAACCCTGAGACGAGGATTAGCGTTGATGAAATTCTTCAAGACCCGTGGTTCAACTCGGGTGGATATAAGGTGGACCGGGTTTTAGTTAAGGAACCGGAGTTGGAGGAAAGTCAAACCGGGTTTAAGTCGATGAACGCGTTTGATTTGATATCGTTTTCAACTGGGTTAGATATGTCTGGTTTGTTTGAGGATCAAAACGGGTCGGGTTTAGCTGAATGGGTTGTTTCAAGGGACAAACCGGAGAAAATTATTGAAAGGGTGGAGGAGGTGGTTAAGGGAACGACGGTAGTTGTAACAAAAATGGAAAATTGTGGTGGAGCAAAATTGGAGGGACAAGAAGGTAATTTGATTGGTGTTGTTATGGTTTACCGGTTAACGGATGAATTTGTGGTAGTTGAAATGAAGAAACGTGGAAAGGGGGAGGAATCTGAGGCGAAATTGTGGAAAAATAAATTGCGACCTTTGCTTGTTGAGTTGGCTAAGAAACCGGAAGAGCCGGTTTCCCGGTGA 1299 0.4519 MAEESQIQIQATNKSTNGVVLFEKYEIGKLLGVGASAKVYHATNVETGKSVAVKVMNKKKLVNGGFSPNIEREISILSRLHHPNIVNLFEVLASKTKIYFIIELASAGELFEEVAKRDKLTEEHARKYFRQLISAVKHCHSHGVYHRDLKLDNLLLDENDNLKVTDFGLSAVKNQIRPDGLLHTVCGTPSYVAPEILAKKGYNGAKADVWSCGVVLFAITAGYLPFNDYNITVLYRKIYRGQFRFPKWFSCDLKNLLSRLLDTNPETRISVDEILQDPWFNSGGYKVDRVLVKEPELEESQTGFKSMNAFDLISFSTGLDMSGLFEDQNGSGLAEWVVSRDKPEKIIERVEEVVKGTTVVVTKMENCGGAKLEGQEGNLIGVVMVYRLTDEFVVVEMKKRGKGEESEAKLWKNKLRPLLVELAKKPEEPVSR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02400 432 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vivi6g02400 432 FunFam Aurora kinase A 18 108 - -
Vivi6g02400 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 406 - -
Vivi6g02400 432 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02400 432 Gene3D Transferase(Phosphotransferase) domain 1 111 284 - -
Vivi6g02400 432 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Vivi6g02400 432 SUPERFAMILY Protein kinase-like (PK-like) 21 316 IPR011009 -
Vivi6g02400 432 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02400 432 Gene3D Phosphorylase Kinase; domain 1 18 110 - -
Vivi6g02400 432 FunFam CAMK family protein kinase 20 311 - -
Vivi6g02400 432 Pfam Protein kinase domain 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g02400 432 Gene3D Kinase associated domain 1, KA1 302 424 - -
Vivi6g02400 432 CDD CIPK_C 308 419 - -
Vivi6g02400 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vivi6g02400 432 Pfam NAF domain 305 363 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02400 Vivi-Chr6 105040786 105042565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02400 6 425 CBL-interacting serine-threonine protein kinases AT2G30360 53.991 2.15e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi6g02400 Pkinase 3.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02400 - K12761 gmx:100788245 566.229