Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02380 ATGGATTCAAAGGATCAAAGAAGATTGGCTCTCCAACACACGTTTCAACAACTTCGAGAAGTCACAAACTCTAGTGCTATAAACAAAGCCTCAATTATTGTTGATGCCTCCAAATATATACAAGAATTGAAGCAAAAAGTTGAGGGACTGAACTCTGAGTTAGGAATTGTTGAGTCCTCTTCCTCTCAAATGGATGAGCTACCTATGGTGAGTGTGGAAACCCTAGAAAAGGGTTTCTTAATTAATGTGCTTTTAGAGAAGAATAAACCTGGAATGCTGGTGTCAATACTGGAAGCTTTTGAAGATTTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAACTAGAAGCTGTGGGAGGAGATAGTCACAAGGACGACAGTATCAACGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACGACTAA 456 0.4101 MDSKDQRRLALQHTFQQLREVTNSSAINKASIIVDASKYIQELKQKVEGLNSELGIVESSSSQMDELPMVSVETLEKGFLINVLLEKNKPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02380 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 58 IPR036638 GO:0046983
Vivi6g02380 151 Gene3D - 5 67 IPR036638 GO:0046983
Vivi6g02380 151 Coils Coil 33 60 - -
Vivi6g02380 151 CDD ACT_UUR-ACR-like 87 146 - -
Vivi6g02380 151 ProSiteProfiles ACT domain profile. 81 151 IPR002912 -
Vivi6g02380 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02380 Vivi-Chr6 104376199 104378526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02380 1 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 28.800 1.27e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02380 - - gmx:100782382 231.491