Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02374 ATGGCAGATCCTGCTAGTAATGGAGGTCTTGATCGAGATATTGAACAAGCACTCACTATTTTGAAGAAAGGAACTCAGATAATAAAGTACAGCCGAAAAGCGAAGCCAAAAGTTTGCCCTTTCAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAAGGAAAGGACTCTACAACTATCTTCGGTTTCACGCATTATTCCTGGACAAAGAACCGCTGTATTTAGAAGATATTTGCAACAAGAAAAGGACTATCTTTCGTTTTCGCTTGTTTATAATAACGGAGATCGAACACTTGATCTGATATGCAAGGACAAAGCTGAGGTAGAGGTGTGGTTTGCAGGGCTTAAACAATTAATTTCCAACGGAAGGCATAAAAGGCTTACTAGGAGTCAATCATCATATGACGGTGTTGATTATATTCCGAATCGACCTTTTGGTGCAGTATTAGAGTTTTCTACAAGCCTTTCTCGCGGTAGGCTCTCTACCACCTCGACTCATTCAGCTCCTCGTGAGTCATCATTGTGTTGGGCGAACCCAGATGTTGGGTTAGATCGTAAAAATATGAATGCAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCAAGTACACCTAGCTGTTCGAGTGGAGGATCGGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCCGATGCAGTTTCACCGGATGGAAGTGTCACTCATCTCCCTTCCACCACAGATGTATTGGTTCCTAAGCCTTTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCCGGTGTGCGTCACATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGCGGACGACTCGGTCATGGATTGGATAAAGATTTTGGCCGACCTCAACTTGTCGAGTTTCTATCCGTTACTAGTGTGGAGAGTGTTGCGTGCGGAGAGAATCATACATGTGCTGTATCTATATCAGACGATTTATTCTCATGGGGTGATGGTACATATAACGTTGGAATTCTCGGACATGGAACCGATGTTAGCCATTGGATACCAAAGAGGATTAGCGGTCCTTTGGAAGGACTTCAAGTTATATCGATTGCATGTGGTACATGGCATTCGGCACTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGCGATGGAACATTCGGTGTATTAGGTCATGGAAATCGAGAGAGCGTGTCATATCCGAAAGAGGTACAATTGTTAAGTGGTTTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAATCAGGTTCGAACGTTTCGTCACGAAAGCTCTTCACTTGGGGAGACGGCGACAAAAATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCGACTTGTGTTTCAACGCTCATCGAATATAATTTCCACCAGATTGCATGTGGACATACTATGACTATTGCTCTCACTACTTCCGGACATTTATTTACTATGGGAGGCACTGAATTCGGTCAGCTAGGAAATTCTTTATCCGATGGAAAAATACCGATACTCGTACAAGACTCGTTGGTGGGTGAGTTTGTCGAGGAAATATCATGCGGAGCACATCATGTCGCTGCTTTGACGTCGAGGAGCGAATTATTTACTTGGGGTAAAGGTGCGAATGGAAGATTAGGACAAGGAGATATCGACGATAGAAAAACACCGACATTGGTGGAAGCCTTGAAAGAAAGGCATGTCAAAAACATTTCTTGCGGCTCAAGTTTCACTTCTTGCATATGCATTCATAAATGGGTATCTGGAGTTGACCAATCCGCTTGCACCGGTTGTAGACAACCGTTTGGTTTTACTAGAAAAAGACATAATTGTTATAACTGCGGATTAGTACATTGTCATGGTTGTAGCTCGAGAAAAGTTTTGAAAGCCGCATTGGCTCCCACGCCAGGAAAGCCTCACCGTGTATGCGATTCTTGCTACGCCAAGCTTAAAGCGATCGAGTCAAACGCGGCTTCCAGTCTTAATAGAAAAGTTACTAATACACAACCTCGCAATTCTATCGAGGGAAGGGATAGATACGGCCAAGGAGAAATAATAAGATCCACAAAAATTCTTTTTCCTCCTTTCTCAGAACCGCTAAAATATCTCGAAATGAGGACTAATAATAAGCTCGGAAGTTCTTCCATGATGCCAACTTCTCAAATTCCGTCTATTACACAAATGAAAGAGATGGCATTTCCAAGTGCAGCAGGTTCCATTCAAAATAGTTTGAAGCTTGCGATAGCTCCAGCTCCACCGTCAGCTCCACCTCTCAATTCGAGATCAGTATCACCATACCCGAGAAGACCAAGTCCGCCGCGTTCTAACAGTCCAGGATTTTCAAGAAGTCTTATCGAAAGTTTGAAGAAGACAAACGAGCTTTTGAACCAAGAAGTGTCGAAATTGCAGAACCAAAATCGAAGCTTGAAGCAAAAAAGCGACATGGAAATTCAGAAACTACAGAAAAACATTAAGGATGCCGCGATATTAGCTGCAGAAGAATCTTCTAAACACAAAGCAGCGAAAGAATTTTTCGAGTCCATGGTAACTCAGTTGAAGGAAATGACCGAGCAATTGCCACCAGAAGTTTTAGAGAGCGAAAAATTTAGTAACATGGTTGTTCAGGCTGAGAATTTTCTAGATGAAAATCCGAAATCCGAAACATGTTCGATACCATCAAACTTGGAATCGGAGCAACAAAGTGAACGCGTAATAGAAGAAAATAACCACGAAGCTGCAGAAGTTAATCCGTCTCAGGATGCAGGAGATGTTTTTCAAGAAAGCAACGGATCGTCCTCGTCTAATACCGAAACAATAGCAGCACCATCACAAAGCTCTGAAAATGATTCAAAATCATTGAACCCTTCAAGATCAGTGAGAGAAGGAGAATCACAAATCATTGAACAATTCGAACCTGGCGTCTACGTGACACTGATAGTAAAGCCTAACGGTAATAGAGCTTTCAAACGTGTTCGATTCAGTAAACGAAGGTTTCGTGAAGATCAAGCAGAACAATGGTGGAACACGAACAAAGATAGGGTGCTTGAGAGATACAATCCACATGCAAAAATTTCTAAAGATGTAGCGCCGACGCCGTCTAGCAGTCCCCTGCCACCACCTACGAATTCTGAAAATGAAGCATCGTCGAGCAGTACCGCGCAACCACCGGCTGAAGAAAACATTGAGGCAGCACCTTCATAA 3276 0.427 MADPASNGGLDRDIEQALTILKKGTQIIKYSRKAKPKVCPFRLSLDETTLIWISHKKERTLQLSSVSRIIPGQRTAVFRRYLQQEKDYLSFSLVYNNGDRTLDLICKDKAEVEVWFAGLKQLISNGRHKRLTRSQSSYDGVDYIPNRPFGAVLEFSTSLSRGRLSTTSTHSAPRESSLCWANPDVGLDRKNMNARTSIGDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWADAVSPDGSVTHLPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGLDKDFGRPQLVEFLSVTSVESVACGENHTCAVSISDDLFSWGDGTYNVGILGHGTDVSHWIPKRISGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKNRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTMGGTEFGQLGNSLSDGKIPILVQDSLVGEFVEEISCGAHHVAALTSRSELFTWGKGANGRLGQGDIDDRKTPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYAKLKAIESNAASSLNRKVTNTQPRNSIEGRDRYGQGEIIRSTKILFPPFSEPLKYLEMRTNNKLGSSSMMPTSQIPSITQMKEMAFPSAAGSIQNSLKLAIAPAPPSAPPLNSRSVSPYPRRPSPPRSNSPGFSRSLIESLKKTNELLNQEVSKLQNQNRSLKQKSDMEIQKLQKNIKDAAILAAEESSKHKAAKEFFESMVTQLKEMTEQLPPEVLESEKFSNMVVQAENFLDENPKSETCSIPSNLESEQQSERVIEENNHEAAEVNPSQDAGDVFQESNGSSSSNTETIAAPSQSSENDSKSLNPSRSVREGESQIIEQFEPGVYVTLIVKPNGNRAFKRVRFSKRRFREDQAEQWWNTNKDRVLERYNPHAKISKDVAPTPSSSPLPPPTNSENEASSSSTAQPPAEENIEAAPS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02374 1091 Gene3D - 12 130 IPR011993 -
Vivi6g02374 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Vivi6g02374 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 338 387 IPR000408 -
Vivi6g02374 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Vivi6g02374 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 456 502 IPR000408 -
Vivi6g02374 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Vivi6g02374 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Vivi6g02374 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Vivi6g02374 1091 SUPERFAMILY RCC1/BLIP-II 225 611 IPR009091 -
Vivi6g02374 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Vivi6g02374 1091 Pfam Transcription factor BRX N-terminal domain 858 894 IPR027988 -
Vivi6g02374 1091 SUPERFAMILY FYVE/PHD zinc finger 610 680 IPR011011 -
Vivi6g02374 1091 SMART fyve_4 608 677 IPR000306 GO:0046872
Vivi6g02374 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 870 - -
Vivi6g02374 1091 Coils Coil 810 862 - -
Vivi6g02374 1091 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vivi6g02374 1091 CDD FYVE_like_SF 619 672 - -
Vivi6g02374 1091 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Vivi6g02374 1091 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Vivi6g02374 1091 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Vivi6g02374 1091 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Vivi6g02374 1091 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Vivi6g02374 1091 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Vivi6g02374 1091 ProSiteProfiles BRX domain profile. 989 1044 IPR013591 -
Vivi6g02374 1091 MobiDBLite consensus disorder prediction 904 924 - -
Vivi6g02374 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 989 1043 IPR013591 -
Vivi6g02374 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Vivi6g02374 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Vivi6g02374 1091 MobiDBLite consensus disorder prediction 946 987 - -
Vivi6g02374 1091 CDD PH_PLC_plant-like 12 124 - -
Vivi6g02374 1091 Pfam FYVE zinc finger 610 676 IPR000306 GO:0046872
Vivi6g02374 1091 MobiDBLite consensus disorder prediction 1065 1082 - -
Vivi6g02374 1091 MobiDBLite consensus disorder prediction 776 806 - -
Vivi6g02374 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Vivi6g02374 1091 FunFam PH, RCC1 and FYVE domains-containing protein 1 197 445 - -
Vivi6g02374 1091 MobiDBLite consensus disorder prediction 1045 1091 - -
Vivi6g02374 1091 MobiDBLite consensus disorder prediction 904 987 - -
Vivi6g02374 1091 SUPERFAMILY PH domain-like 13 123 - -
Vivi6g02374 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Vivi6g02374 1091 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Vivi6g02374 1091 Gene3D - 448 614 IPR009091 -
Vivi6g02374 1091 Gene3D - 190 447 IPR009091 -
Vivi6g02374 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Vivi6g02374 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 687 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02374 Vivi-Chr6 104152342 104157729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02374 986 1060 Major Intrinsic Protein MIP AT1G31880 36.000 5.39e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02374 - - gmx:100779684 1483.77