Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02357 ATGGCTCGACCGATGGAGAAAGTTGTGGACATCAACGACTCCAAGGAACTATGGAAGGTGGCGGTTAGAGTTGTCCATAAATGGAAGGTAGTCTCCAACAACAAGGAGCACTATGAGATGATCTTTCAAGACAAAGAGGGGTCTGACATTCACGTAGTTGTTCCAAATACGTGCATGGCCGCTTACAATGACAAGTTTGAGGTGGACAACACATACACTGTCTCCAACTTTGCAGTGCCGCCAAATAACTTGGTTTTTAAACCAAGCACTCACAAGTTCTTGGTGAAGTTCACGGGAGGAACTTCTGTGAATGATGTCAACAAACACGACATACCCCCCATGCAACGCGCCTTCACCAGTTTCCCTGATATTATGATCGGCAAGTTTAAGAAGGATGTCTTGATCGACGTTATTGGCGTGATCGATGCTATTGGATATCAACAAACTCAAAGTGGTGGGGAAACAATGCAGGTCAATTTTGTACTCAGGGATGCAACCAACAACACAATGAACTGCACCCTCTGGGAGGACTATGCCAAACAGTTTTTCAAGTTTCACGAGAAAAATCCAACAACCTCTGGACCAACTGTGATTTTGCTTAGCTATGCAAAAGTTAAGGAACAGGGCCAATACCCACTATCCGTTACAAATACATTCCATGTTACAAAACTCCAGATCAATCCAGATTTGCCTTCTGTTAAAGACTTCGTAAATGGTTTCTCAAAGGAGGATTTGCGTACCGTTTCAAGCCAGCTCAACTCACACTCTCAGCAATACTCGCGCAGCTCGAATTCTGAGAATGGTAGACAGAGTGACACTCAAAAACTGCTTAATATGGTTGTTACTCTGCCTCTGAGTCAACTTAAACAACTGCGCGAGGACACTTTCTGTGCTACTGTTGCAAAGACAAGGAAACTCATTGCTTCTTCCTATGGATGGTACTACCGGTGCTGCCATGCATGCACCAAAGCTGCACGCGGTGATAAAACTCCATACGAATGTGATAATCACCATTTGACTGGGACTGAAATATATAAGGAATGCCAACAAATCTTAGGTATTTCAGCTGCTCAAATGCGCGACACAATGATACATGCTGGTATTACAGATCCTTTGGATTTTCCCTTAAAGCTTGATGCCATGTTGGACTTGGATCTGGCTTTAAGAGTTAGATGGCAGCCCAGTTGGGACAGCTGCTCTGTTATTAGGTTTATAGATGACAAACTGTTTGTTAAACAATTCGGTGCTCCTTGGGAGCCTAGGTAG 1266 0.4384 MARPMEKVVDINDSKELWKVAVRVVHKWKVVSNNKEHYEMIFQDKEGSDIHVVVPNTCMAAYNDKFEVDNTYTVSNFAVPPNNLVFKPSTHKFLVKFTGGTSVNDVNKHDIPPMQRAFTSFPDIMIGKFKKDVLIDVIGVIDAIGYQQTQSGGETMQVNFVLRDATNNTMNCTLWEDYAKQFFKFHEKNPTTSGPTVILLSYAKVKEQGQYPLSVTNTFHVTKLQINPDLPSVKDFVNGFSKEDLRTVSSQLNSHSQQYSRSSNSENGRQSDTQKLLNMVVTLPLSQLKQLREDTFCATVAKTRKLIASSYGWYYRCCHACTKAARGDKTPYECDNHHLTGTEIYKECQQILGISAAQMRDTMIHAGITDPLDFPLKLDAMLDLDLALRVRWQPSWDSCSVIRFIDDKLFVKQFGAPWEPR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02357 421 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi6g02357 421 Gene3D - 4 108 IPR012340 -
Vivi6g02357 421 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi6g02357 421 Gene3D - 109 249 IPR012340 -
Vivi6g02357 421 SUPERFAMILY Nucleic acid-binding proteins 117 241 IPR012340 -
Vivi6g02357 421 CDD RPA1_DBD_A_like 19 103 - -
Vivi6g02357 421 MobiDBLite consensus disorder prediction 251 271 - -
Vivi6g02357 421 CDD RPA1_DBD_B_like 136 237 - -
Vivi6g02357 421 PANTHER OS03G0429900 PROTEIN 14 353 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02357 Vivi-Chr6 103559616 103562047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02357 1 323 Core DNA Replication Machinery Family AT5G08020 22.874 1.63e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02357 - - vvo:131614258 849.736