Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02316 ATGACCATGGATGATCAACATCATCATCATCATAACTGGGAAGTTTCTGAACTCAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTTCCTCTTTCTCAATCACCAGTTTCATCTTCTTTTCATTTACCATTTTCATCCACTTTTAGCCCAGCTGATTTCTTAATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAAAGCTTCAACTGGAATAAGGAACAAGACCAACAAGGTGGTGACAAGAAGGATGAGAAAAGCTTCTCTGATTTCTCTTTTCCAACTCAAACTAAACATGAACCTGTCTTTCAATCTTCCTCAAACATGTTTCAACCAGAACCAGTTAAGAAACAAGACATATGGAAATTCAATGAGCCGGCAAAGATAGCCGATTTTTCGTCTGATAGGACGGCGTCGAAATCTGAATTCACTTCAACTCAGAGCTTTTCGACGGATATAGTACTAAGTAAACCAGAAACACATGGTAACTCAGTCAATGGATCTGGCTATGTTAACTACAATGTATCTCAATCTGTTAGGGAACAGAAGAGATCAGAAGATGGATTCAATTGGCGAAAATATGGACAGAAACAAGTGAAAGGAAGTGAAAATCCGCGAAGTTATTACAAGTGCACGCATCCGACTTGCTCGATGAAGAAGAAAGTTGAGAGGGATTTGGATGGACAAATTACTGAAATTGTGTATAAGGGAACTCATAACCATCCTAAGCCTCAGTCTAACAGAAGAACAAACTCTCAGCCTTCTTCGTCATGCACGAACTCGGGTATTTCTGATCAATCTGTGATGGACCGCGTTTCTATACAAGAAGATTCTTCGACATCTGTGGGAGAGGAAGAGTTTGAGCAAACATCACAGACTAGTTATTCTGGTGGAAATGACGACGCCCTTGGACCGGATGCCAAAAGATGGAAGGGTGATGTTGAAAACGATGGCTATTCGGCTGCTGGTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTATGAGTGAAATCGATATACTCGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTAAAAGGAAATCCTAACGCAAGGAGCTATTACAAATGCACTGCCTCTGGTTGTTCAGTGAGAAAACACGTTGAGCGAGCTGCCCATGATATCAAAGCCGTGATCACAACTTACGAAGGCAAACACAACCACGACGTACCAGCTGCACGCGGTTCTGCAGGTTACAACATGAACAGAAATTCCATGAACAACAGCGTCGTACCAGCACCTATTAGGCCCTCAGCAGTGAATTGTTATTCAAACTCATCAAGTCTCACAAATTCACTTTATAACAAGACCGATCTTCCTACCAACGGAAATCACGAGTTGTTTCAACCAGACATGTTGCAGGGTCACGGAAGGCTTGGATATTCATCTCTTGGAAGATCAATGGATTCATCAGCCAACCATTTACAATACTCAGACACGGCGTACTTAAAGGCTAAGGATGAAAGGAAAGACGACTTATTCCTTCAGTCATTTTTGTCAAAAGACTATTAA 1587 0.4102 MTMDDQHHHHHNWEVSELNDVPKFKSVQPPSLPLSQSPVSSSFHLPFSSTFSPADFLISPFFLSSPNVFASPTTEAFANQSFNWNKEQDQQGGDKKDEKSFSDFSFPTQTKHEPVFQSSSNMFQPEPVKKQDIWKFNEPAKIADFSSDRTASKSEFTSTQSFSTDIVLSKPETHGNSVNGSGYVNYNVSQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHPTCSMKKKVERDLDGQITEIVYKGTHNHPKPQSNRRTNSQPSSSCTNSGISDQSVMDRVSIQEDSSTSVGEEEFEQTSQTSYSGGNDDALGPDAKRWKGDVENDGYSAAGSRTVKEPRVVVQTMSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTASGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSAGYNMNRNSMNNSVVPAPIRPSAVNCYSNSSSLTNSLYNKTDLPTNGNHELFQPDMLQGHGRLGYSSLGRSMDSSANHLQYSDTAYLKAKDERKDDLFLQSFLSKDY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02316 528 MobiDBLite consensus disorder prediction 249 336 - -
Vivi6g02316 528 SUPERFAMILY WRKY DNA-binding domain 194 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 ProSiteProfiles WRKY domain profile. 193 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 FunFam WRKY transcription factor 187 258 - -
Vivi6g02316 528 SUPERFAMILY WRKY DNA-binding domain 348 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 FunFam WRKY transcription factor 33 343 409 - -
Vivi6g02316 528 MobiDBLite consensus disorder prediction 195 223 - -
Vivi6g02316 528 Pfam WRKY DNA -binding domain 357 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 MobiDBLite consensus disorder prediction 253 312 - -
Vivi6g02316 528 SMART WRKY_cls 356 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 SMART WRKY_cls 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 Gene3D WRKY domain 341 417 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 Gene3D WRKY domain 183 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 ProSiteProfiles WRKY domain profile. 351 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi6g02316 528 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 114 434 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02316 Vivi-Chr6 102106456 102108661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02316 20 467 WRKY Transcription Factor Family AT2G38470 47.974 5.62e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi6g02316 WRKY 1.1e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02316 6 102106456 102108661 Vivi6g02316 6 102106456 102108661 ECH
Vivi6g02316 6 102106456 102108661 Vivi5g00443 5 6552788 6555636 PCT