Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02305 ATGGGTGGCTGTTGCAGCCACGATGTTTCTGTTCGAGGCAAAGTGGAAAGCGAGGGGGATGATGGAGAATATGATTATGAGGATGAGAAGAGTAATGATCATGTCACGTATGAAAATGATGGATCAATGGTTAAATTAAGAGGATTTTCCAAAGCTGTTTCTATGTATACTCAACAGGGTAAGAAAGGTATCAACCAAGATTCAATGACTGTTTGGGAGGATTATACCGGAGAACAAGGCATGATCTTATGTGGTGTGTTTGATGGTCATGGTCCTTTAGGCCACAAGGTTTCGCAGTTTATTCGCGACAATCTACCGTTAAAACTGGCTGCAGCAATCAAAATGGCGCAACAGAAAGCCAACAGGTACTATGATGCGACCGATGCAGATACCGAGACTTTTGAGGATGTCCACAACGTTAGTAACCGTCGCAATAACATATCGCTTGCTTCGTGGGAAGGATGTTTTCTGAAATCGTTCGATGAAATGGATGAACATCTCGCTCAGGAAATTAATACTGATAGCTATTGTAGCGGTTGCACGGCTGTAACTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGTGATTCTCGCGCAATTCTTTGTACAAGGGATAGAGATCAACTTATACCTGTTCAACTTACCGTTGATTTAAAACCCGATATTCCAAGTGAAGCTTCGAGAATCTTTAACTGTGAAGGAAGGGTTTTCGCTGCGGAAGAAGAACCAGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCCATGTCAAGAGCCTTCGGAGATTTTTGCTTAAAAGATTATGGCCTAATTGCAGCTCCAGATGTGTTTTACAGAAAAATTACCAAACAAGATGAATTTGTTGTCTTGGCAACTGATGGGATATGGGATGTGCTGACAAACAGTGAAGTAGTAAACATAGTTGCTTCGGCGCCAAGGAAGTCCATCGCAGCAAAGTTGTTAGTAAAGCGCGCTGTGAGGGCATGGAGATACAAGTATCCGGGATCAAAGGTCGACGATTGTGCAGCCATATGTTTGTTTCTTGATGATCAACCTGTTTTGTCGCATTCTCAATCGAGTATGAATAGAAAAAGTCGACATCATCGCAGCAGCAAGCGCGCGAAATCACAGAGAAACGAAGACAACGAAACCGTGGCAGGAAAAGTTGGTGTTGAACTGGATGAAGAATGGAAAGCTCTTGGAGGGTTAGCTAGAGCAAACTCAATATCAAGACTTCCAAGGCTTGCTAGAATTATGAGTAAAAGACAATCATCTAAGCGACTTAATGGAAGTTGA 1317 0.4237 MGGCCSHDVSVRGKVESEGDDGEYDYEDEKSNDHVTYENDGSMVKLRGFSKAVSMYTQQGKKGINQDSMTVWEDYTGEQGMILCGVFDGHGPLGHKVSQFIRDNLPLKLAAAIKMAQQKANRYYDATDADTETFEDVHNVSNRRNNISLASWEGCFLKSFDEMDEHLAQEINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAILCTRDRDQLIPVQLTVDLKPDIPSEASRIFNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIAAPDVFYRKITKQDEFVVLATDGIWDVLTNSEVVNIVASAPRKSIAAKLLVKRAVRAWRYKYPGSKVDDCAAICLFLDDQPVLSHSQSSMNRKSRHHRSSKRAKSQRNEDNETVAGKVGVELDEEWKALGGLARANSISRLPRLARIMSKRQSSKRLNGS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02305 438 PANTHER PROTEIN PHOSPHATASE 43 353 IPR015655 GO:0004722|GO:0006470
Vivi6g02305 438 MobiDBLite consensus disorder prediction 364 392 - -
Vivi6g02305 438 SUPERFAMILY PP2C-like 46 357 IPR036457 -
Vivi6g02305 438 ProSiteProfiles PPM-type phosphatase domain profile. 52 355 IPR001932 -
Vivi6g02305 438 Pfam Protein phosphatase 2C 138 333 IPR001932 -
Vivi6g02305 438 CDD PP2Cc 53 355 IPR001932 -
Vivi6g02305 438 Gene3D - 41 357 IPR036457 -
Vivi6g02305 438 MobiDBLite consensus disorder prediction 1 30 - -
Vivi6g02305 438 SMART PP2C_4 43 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02305 Vivi-Chr6 101961348 101963734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02305 1 359 PP2C-type Phosphatase Gene Family AT5G01700 52.089 2.26e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02305 - - mtr:11405988 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02305 6 101961348 101963734 Vivi6g02305 6 101961348 101963734 ECH
Vivi6g02305 6 101961348 101963734 Vivi5g00437 5 6506486 6509089 PCT