Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02290 ATGAAGATTGAAACTGTTTCTGGAGAAAGGAAATCACGCAAGAGACGCAGTGGCGGAAGAAGGGATTCAGTGGAAGATACTCTTGAGAAGTGGAAGAAATACAACAAGCAGCAACAGCAAAAACTTGGTTGTGGAGATAATGGAGCTGAAAAGATTCATAAAGCTCCAGCAAAAGGTTCGAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCAGATTGCAATTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTGGCTGAGATTCGCGAGCCGATCAATGGTAAACATGTTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCTACAGCACATGAAGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCTATGTATGGACCTAGTGCTCGTTTGAACTTTCCTAATGGATTGCCACCTTCATCATCAAGTGGTGGTTCAGGTTCTATTGATTCATTGAAGGGTGAGGAGGATCTTGCAAAAGCTGAAGAGTTGGAGGGTAATCTTCATCAGTATGATAAAGAGAATAAGATTCTTGCTAAAAAATTTGTTGCTGATGGCGACTCAGTAGAGGAATTGAAGGAAGGGATAATAGCTGGTACTGTCCAATGTAAAACCAACAAGAGATGTAAGAAAACTGTTCATCAAGAGTCCTACAAGAATGTTAAATCAGAAACACGTGTAGAAAATGAACTGCCAGAGAGTGAATCAGAGAAGGTTTTGGAGAATTCTGACATGGGTGGAGAGTGTTATCATGTACAGAAAGAGTCTATAGATTCAGCCATGAACTCGGGATCTTCTGATAGAGCGGAAAATGGGATTCTGGTGAAGAGTGAAGAAACAAGTAGAGGATCAGTTGAGGATTTGAAATCCTTTGAGTTGAACTGCAACAACAATTTCTTTGGAAACCTGCACAATATGCTTCCAGATTTCAATCCAATACCAGATTCTGAGAGTTTTAACATCAGAACCGAGGCTTCCCTTGTAAAGAGACATAAGAAGGAAGTAATTGGACATTTCTTAAGCCATGATCAGTCACAAAATGAGCAAAGTAAAAATGGACATTTTGATGGGATGAAAAATGAGCTTAAGGGATTGGAATGCAAGCTGAGAGGCCAATCTATTGATTGCAATAATTATGAGGCTCAGAGATTACCTTGCGTGCAGGGAGTTCATTTGTTTGGTGGTGCCAGTGTTGGACCAACCGATAGAATGTCCCAAGTTGAGGCTTTGAACAACAATACTAATAAAAGCACTAATTTAAAAGAGAGAGGAAACAATGGAAGTGCACCTTATGGATTTAGTTCAGGGCCAAGTAGGAAGTTGAGTGATCTTTCTCAACAGCTGCAGAAATTGGGTGGTTACTTGCCTGAAAATTGGAATAATATGCAGTTTGCAGATCTTGAAGTTGGTTATGATTATAGTTTCTTGAAACCTGATTATGATTTTGGCTTACTAGAAGAGAAGAAGTTACTAGATATATGTTTTTCACATATAGGATCTTAA 1524 0.3976 MKIETVSGERKSRKRRSGGRRDSVEDTLEKWKKYNKQQQQKLGCGDNGAEKIHKAPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFSTAHEAALAYDKAAKAMYGPSARLNFPNGLPPSSSSGGSGSIDSLKGEEDLAKAEELEGNLHQYDKENKILAKKFVADGDSVEELKEGIIAGTVQCKTNKRCKKTVHQESYKNVKSETRVENELPESESEKVLENSDMGGECYHVQKESIDSAMNSGSSDRAENGILVKSEETSRGSVEDLKSFELNCNNNFFGNLHNMLPDFNPIPDSESFNIRTEASLVKRHKKEVIGHFLSHDQSQNEQSKNGHFDGMKNELKGLECKLRGQSIDCNNYEAQRLPCVQGVHLFGGASVGPTDRMSQVEALNNNTNKSTNLKERGNNGSAPYGFSSGPSRKLSDLSQQLQKLGGYLPENWNNMQFADLEVGYDYSFLKPDYDFGLLEEKKLLDICFSHIGS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02290 507 Coils Coil 21 41 - -
Vivi6g02290 507 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
Vivi6g02290 507 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Vivi6g02290 507 SUPERFAMILY DNA-binding domain 77 142 IPR016177 GO:0003677
Vivi6g02290 507 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Vivi6g02290 507 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Vivi6g02290 507 Gene3D AP2/ERF domain 77 142 IPR036955 GO:0003700|GO:0006355
Vivi6g02290 507 MobiDBLite consensus disorder prediction 1 36 - -
Vivi6g02290 507 Coils Coil 168 188 - -
Vivi6g02290 507 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 347 - -
Vivi6g02290 507 MobiDBLite consensus disorder prediction 419 444 - -
Vivi6g02290 507 FunFam Ethylene-responsive transcription factor 2 76 142 - -
Vivi6g02290 507 MobiDBLite consensus disorder prediction 1 77 - -
Vivi6g02290 507 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
Vivi6g02290 507 MobiDBLite consensus disorder prediction 228 250 - -
Vivi6g02290 507 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02290 Vivi-Chr6 101446721 101448759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02290 13 170 AP2-EREBP Transcription Factor Family AT2G40340 53.988 4.86e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g02290 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02290 - - tpra:123891882 763.066