Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02277 ATGATTCAACAAGAAAATTTTCACTCTCCATGGCCATTAATCTATGAAGACATAAACCCATCAACTTTTGATAATCAAGTTGTTGATCCCTATAGCTTCACCATGATAAACCATGTTAATGATGACTATATTCCATATACCATCATCATGGATGACCATGTTGAGAACTGTGATCCATATGACATCATCATGGATGACCATGTTGATGATTATGAATTCAGTACTCTACTAACCACCTCAGATACTACTCTCTTTGACAACATCTCCATGTTCACTAATGATCATATCCAATTTCCAATTGAACAAGAAACCTTAGAACTTCCATCACTAATGGAATTTGAATCTTTTCATTCAATTTTATATCCCCAAATTGTTGATATTCAAGATCATCCGTATCAAGAAGAAAGTTCAAATCTTCTCGGAGACAGTTGTAAAACGGTCATCAGTTCTACTTTAACCACCGATGATTTCCCTTCGAAAAAAATTTCTTATGAAGCATGGAGTCCAACACAATCAATGAAATCAGATTTTTCCTCAACACAACAATCACTTATTCTTCCACAAGAAAACATGGAAATTGACAACAAAGTGATTCTTCCACACTTGATGGAAGCATATGGAGAAGCCTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTCATTTGAAGTGTATAAGCCAAAAAGTGACTCCACTTGGTGATTCTCTAGAGACACTTGCATTTTATTTGTCACAAGAAGTGACAAATCATGGAGATTATCTCAAAGGGGAAGCTCACAAGAATTTTGAAGAAGCTTTTAAGGTAATTTATCAAGGAAATCCAATTGGAAAAATAGCTCATTTTGCAGCTATTTCATCTATTCTTGAGGCTGCTATGTTAGAAGATTGTGATGAAATTCACATAATTGATTTTTGTATTGGAAATGGAATTCAATGGCCTTTTTTATTAGAGGCGGTTTCGAAGATGAAGAAAAGATTGAAATTGACATCAATTAAATGGAGTGATGAAAATTCTGAATGTGTTTGGAACTTTGAGGATACCAAAAGAGAACTTTATGAGTATGCTAAATCATGTGGTTTGAAATTGAAGGTAGAGGAAAAAGAATTGGAAGAGTTGGTTAGTGAGATCAAAAGAATGAACAAGAAGGTTTTGAAGAAAGAGTTTTTGGCTTTTAATTTGATGATTGGTCTTCCTCATATGGGAATGGTAAGAAGCAGAAGAAAAAGTGCTTTTGAGTTTGTAAAAGTAGCTGAGGATTTGATCAAGAACTATGGTAGCAAGGGAATGATTACTTTTGGTGATGGTGATGCATTTGAAAAACTCAAAAATAGTTTAAATTTTAAGTCATTTTTTGAAGGGAATTTGGTGCATTATAAGGCCTTGTTGGAATCAATTGAGTCACAATTTTCAGAAAAATTCTCAGAAGCAAGAATTGCATGTGAGGTGTTGTTTGTTGCACCTTGTATATCTTCTCTTGATTGGTTACAAACATGGGAAGAGATGAAAAGGGATGGTAATTTTGAGGTTGAGTTGGGCTTAGAAGGTGGAAGATTGAGCAAAAGTGTTTTGATGGAAGTAAGTGAAGTTTTGAGAGGAAGTGAAAGGTCATATGAGGCAAGAATTGAAGGACAAAATGATAATGAACTTGTTTTGGAATGGAAAGGAACTCAATTATTAAGATTTTCAATTTGGAAAAACTAA 1701 0.341 MIQQENFHSPWPLIYEDINPSTFDNQVVDPYSFTMINHVNDDYIPYTIIMDDHVENCDPYDIIMDDHVDDYEFSTLLTTSDTTLFDNISMFTNDHIQFPIEQETLELPSLMEFESFHSILYPQIVDIQDHPYQEESSNLLGDSCKTVISSTLTTDDFPSKKISYEAWSPTQSMKSDFSSTQQSLILPQENMEIDNKVILPHLMEAYGEALEKGQKALAEVHLKCISQKVTPLGDSLETLAFYLSQEVTNHGDYLKGEAHKNFEEAFKVIYQGNPIGKIAHFAAISSILEAAMLEDCDEIHIIDFCIGNGIQWPFLLEAVSKMKKRLKLTSIKWSDENSECVWNFEDTKRELYEYAKSCGLKLKVEEKELEELVSEIKRMNKKVLKKEFLAFNLMIGLPHMGMVRSRRKSAFEFVKVAEDLIKNYGSKGMITFGDGDAFEKLKNSLNFKSFFEGNLVHYKALLESIESQFSEKFSEARIACEVLFVAPCISSLDWLQTWEEMKRDGNFEVELGLEGGRLSKSVLMEVSEVLRGSERSYEARIEGQNDNELVLEWKGTQLLRFSIWKN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02277 566 Coils Coil 362 386 - -
Vivi6g02277 566 Pfam GRAS domain family 203 565 IPR005202 -
Vivi6g02277 566 ProSiteProfiles GRAS family profile. 190 565 IPR005202 -
Vivi6g02277 566 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 184 554 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02277 Vivi-Chr6 101033263 101035312 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02277 225 565 GRAS Transcription Factor Family AT5G66770 24.654 1.79e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi6g02277 GRAS 1.3e-32 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02277 - - tpra:123890000 818.92