Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02275 ATGGATATGAAGGAGGAAGAAACATGTGGCTCAATATGTTCAAAGACAAGTGATTCAATGAATGAAGATGGTTGTGAAATTAGTGAAGGAAATGAAGATGATAAAGAAAGTAGTAAGCATAACAATGGAGGAATAAGCTCAAGCAATAGTACAATTGAAGAGATTTCGGAGAAGAAATCATCGGTGAGACCTTATGTTAGATCCAAGTTTCCTCGACTACGTTGGACTCCTGATCTTCATTTTCGATTTCTTCATGCTGTTCAAAGACTTGGTGGACAAGAGAGAGCAACTCCAAAATTGGTTCTTCAATTGATGAATATAAAAGGTTTAAGTATAGCTCATGTGAAGAGTCATTTACAGATGCATAGAACCAAGAAAGTAGTTGACACAAATCAAGACAGAAATGTTTATAATCTCACCCAAATTCCTATGCTTCAAGGCTATACTCCAAATCAAAGTTCATCATATAGATGTGGATATGGAGATGCATCTCTTTCTATATATGAAAACATGGTCCATATGAGTTCAATAAATGAATCTAGAGCTAATTTCTATGGAAAAATGAAAGAGAGAACCAATAATAACCCTCATAGTATTTTCCAAGTGGATTCTTCCAATTTTCGAGAACTATTACCAACAAGTAAAGTTCATGAGCCCAATGAAAACTTCCTCTCATTTTGTGGCCATGAATCTTCAAGAGAAGATCTCCTTACTCAGCCAATAGCACAAGACTTCATGCAAAATGATATTTTACCTTCAAATCAAGTGGAATCAAAGACATTGAAAAGAAAAGCAACAGATTTGGATCTATCACTTAAATTAAATTCAAGGAACATCATTGGTGATCATGATAATCAGAAGCAAGGAAGTATAGAGGATCATCATCATGAATTTGACAGCAATTTATCTCTCTCTTTGTATACTCAATCCTCTTGTGAAGAATCAAAGGAGCAAGAGAAAAGAGTCAATGTAGGTTTGGATCTAACCATATGA 993 0.3464 MDMKEEETCGSICSKTSDSMNEDGCEISEGNEDDKESSKHNNGGISSSNSTIEEISEKKSSVRPYVRSKFPRLRWTPDLHFRFLHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMHRTKKVVDTNQDRNVYNLTQIPMLQGYTPNQSSSYRCGYGDASLSIYENMVHMSSINESRANFYGKMKERTNNNPHSIFQVDSSNFRELLPTSKVHEPNENFLSFCGHESSREDLLTQPIAQDFMQNDILPSNQVESKTLKRKATDLDLSLKLNSRNIIGDHDNQKQGSIEDHHHEFDSNLSLSLYTQSSCEESKEQEKRVNVGLDLTI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02275 330 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 39 304 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vivi6g02275 330 SUPERFAMILY Homeodomain-like 71 125 IPR009057 -
Vivi6g02275 330 Gene3D - 71 127 - -
Vivi6g02275 330 MobiDBLite consensus disorder prediction 1 63 - -
Vivi6g02275 330 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 126 IPR006447 GO:0003677
Vivi6g02275 330 MobiDBLite consensus disorder prediction 41 55 - -
Vivi6g02275 330 Pfam Myb-like DNA-binding domain 73 122 IPR001005 -
Vivi6g02275 330 FunFam Myb family transcription factor 69 127 - -
Vivi6g02275 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 127 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02275 Vivi-Chr6 100935875 100937985 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02275 62 127 G2-like Transcription Factor Family AT2G42660 75.758 7.14e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g02275 Myb_DNA-binding 9.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02275 - - cam:101498576 348.591