Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02272 ATGATTCAACAAGAAATTTTTCACTCTCCATGGCCATTAGTTTATGAAGACATAAACTCATCAATTTTTGTTAATCATAATCATCAAGTTGTTGATCCATATAGCTTCACCATGGTAAACCATGTTGATGATGACTATGTTCCATATGGCATCATCATGGATGACCATGTTGAGAAGTTTGATCCATATGACATCATCATGGATGACCATGTTGATGATTATGAATTCAATACTCTACTAACCACCTCAGATACTAGTACTCTCTCTGACATCTCCATATTCACCAATGATCATATCCAATTTCAAATTGAACAAGAAACCATAGAACTTCCATCACTAATGGAATTTGAATCTTTTCATTCAATTTTATATCCCCAAATTGTTGATATTCAAGATCATCAATATCAAGAAGAAACTGAAGCAAGCTTCACTTCACAAAATCTTTACCGAGGACAAAGTTCAAATCTTTACACCGACGATTTTCCTTCACAAAATTTTTCCTATGAAGAAAGAAGTCCAACACAATCAATGAAATCAGATTTTTCCTCAACACAGCAATCACTTAATCTTCCACAAGAAAACATGCAAATTGACAACAAAGTGATTCTTCCACACTTGATGGAAGCATATGGAGAAGCCTTGGAGAAAGGACAAAAAGCACTAGCAGAAGTTCATTTGAAGTGTATAAGCCAAAAAGTGACTCCACTTGGTGATTCTCTTGAAACTCTTGCATTTTATTTGTCACAAGAAGTGACAAATCATGGAGATTATCTCAAAGGGGAAGCTCACAAGAATTTTGAAGAAGCTTTTAAGGTAATTTATCAAGGAAATCCAATTGGAAAAATAGCTCATTTTGCTGCTATTTCGTCTATTCTTGAGGCTGCTATGTTAGAAGATTGTGATGAAATTCATATAATAGATTTTTGTATTGGAGATGGAATTCAATGGCCTTTTTTGTTGGAGGCTGTTTCAAAGATGAAGAAAAGATTGAAATTGACATCAATTAAATGGAGTGATGATGATTCTGAATGTGTTTGGAATTTTGAGGATACCAAAAGGGAACTATATGAGTATGCTAAATCATGTGGTTTGAAATTGAAGGTGGAGGAAAAAGAATTGGAAGAGTTGGTTAGTGAGATCAAAAGAATGAACAAAAAGGGTTTGAAGAAAGAGTTTTTGGCTTTTAATTTGATGATTGGTCTTCCTCATATGGGAATGGTAAGAAGCAAAAGAAAAAGTGCTTTTGAGTTTCTAAAAGTAGCTGAGGATTTGATCAGAAACTATGGTGGTAAGGGAATGATTACTTTTGGTGATGGTGATGCATTTGAAAAACTCAAAAATAGTTTAAATTTTAAGTCATTTTTTGAAGGGAATTTGGTGCATTATAAGGCCTTGTTGGAATCAATTGAGTCACAATTTTCAGAAAAATTCTCAGAAGCAAGAATTGCATGTGAGGTGTTGTTTGTTGCACCTTGTATATCTTCTCTTGATTGGTTACAAACATGGAAAGAGATGAAAAGTGATGGTAATTTTGAGGTTGAGTTTGGCTTAGAAGGTGAAAGATTGAGCAAAAATGTTTTGATGGAAGTAAGTGAAGTTTTGAGAGGAAGTGAAAGTTCATATGAGGCAAGAATTGAAGGACTAAATGAGAATGAACTTGTTTTGGAATGGAAAGGAACTCAATTATTAAGATTTTCAATTTGGAAAAACTAA 1713 0.3357 MIQQEIFHSPWPLVYEDINSSIFVNHNHQVVDPYSFTMVNHVDDDYVPYGIIMDDHVEKFDPYDIIMDDHVDDYEFNTLLTTSDTSTLSDISIFTNDHIQFQIEQETIELPSLMEFESFHSILYPQIVDIQDHQYQEETEASFTSQNLYRGQSSNLYTDDFPSQNFSYEERSPTQSMKSDFSSTQQSLNLPQENMQIDNKVILPHLMEAYGEALEKGQKALAEVHLKCISQKVTPLGDSLETLAFYLSQEVTNHGDYLKGEAHKNFEEAFKVIYQGNPIGKIAHFAAISSILEAAMLEDCDEIHIIDFCIGDGIQWPFLLEAVSKMKKRLKLTSIKWSDDDSECVWNFEDTKRELYEYAKSCGLKLKVEEKELEELVSEIKRMNKKGLKKEFLAFNLMIGLPHMGMVRSKRKSAFEFLKVAEDLIRNYGGKGMITFGDGDAFEKLKNSLNFKSFFEGNLVHYKALLESIESQFSEKFSEARIACEVLFVAPCISSLDWLQTWKEMKSDGNFEVEFGLEGERLSKNVLMEVSEVLRGSESSYEARIEGLNENELVLEWKGTQLLRFSIWKN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02272 570 ProSiteProfiles GRAS family profile. 194 569 IPR005202 -
Vivi6g02272 570 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 558 IPR005202 -
Vivi6g02272 570 MobiDBLite consensus disorder prediction 164 183 - -
Vivi6g02272 570 Pfam GRAS domain family 207 569 IPR005202 -
Vivi6g02272 570 Coils Coil 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02272 Vivi-Chr6 100715432 100717503 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02272 229 496 GRAS Transcription Factor Family AT5G66770 25.887 3.60e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi6g02272 GRAS 6.9e-32 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02272 - - tpra:123890000 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02272 6 100715432 100717503 Vivi6g02272 6 100715432 100717503 ECH