Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02264 ATGGCCATAGCTCCAGCATACGAAGCAAATCTCCCAGCATCACCAGAATGGCTAAACAAAGGAGACAACGCATGGCAGATGACAGCAGCCACACTAGTTGGCCTCCAAAGCATGCCAGGACTGGTCATCCTCTATGCCAGCATAGTGAAAAAGAAATGGGCTGTGAACTCAGCTTTCATGGCACTTTACGCTTTTGCGGCGGTTTTAATCTGTTGGGTACTCGTGGCTTACAGAATGGCTTTTGGTGAGAAGCTGTTACCCTTTTGGGGTAAAGGAGCACCGGCTTTAGGACAGAAGTTTCTGGTTCGAAGAGCAAGAGTACCTGCGAGTACTCATTATTATAAAAATGGTGTTGATATTGAGACACCTATGGAGGAACCGTTTTTTCCTATGGCGTCGCTGGTTTATTTTCAGTTTACTTTTGCGGCGATTACTATGATTTTGTTGGCGGGTTCTGTTCTTGGGAGGATGAATATTAAGGCTTGGATGGCTTTTGTTCCTCTTTGGTTGGTTTTTTCTTATACTGTTGGGGCTTTTAGTCTTTGGGGTGGTGGGTTTCTTTATCATTGGGGTGTTATTGATTACTCTGGTGGCTATGTTATTCATCTATCTTCTGGGATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGACAGGGAAAGATTTCCACCAAACAATGTATTGTTGATGCTTGCAGGAGCTGGATTATTATGGATGGGGTGGTCTGGGTTCAATGGAGGAGCACCCTATGCAGCAAATGTTGCGTCTTCAATAGCTGTGTTGAACACAAACATTTGTGCAGCAACTAGTCTTCTTGTATGGACAACTCTTGATGTTATTTTCTTTGGGAAGCCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTATGTATCACACCAGGAGCAGGTCTTGTGCAATCGTGGGCAGCTATTGTGATGGGAATATTATCGGGGAGTATTCCGTGGGTATCCATGATGATCTTGCATAAAAAATCAAGTCTTTTACAAAAGGTTGATGACACTCTTGGAGTATTTCACACACATGCCGTGGCTGGCCTACTAGGCGGCCTCCTCACCGGACTCTTCGCCGAGCCGGCCCTATGTCGATTACTATTGCCGGTGACCAATTCGAGAGGTGCATTCTATGGTGGAAGTGGTGGTGTACAATTCCTAAAGCAATTAGTGGCAGCCATGTTTGTCATTGGATGGAACATAGTCTCCACCACAATCATTCTCCTTGTTATACAAGTGTTCATACCTTTGAGAATGCCCGACGAGCAGCTCGAAATCGGAGACGACGCTGCTCACGGTGAGGAAGCTTATGCTCTTTGGGGTGATGGAGAGAAATACGATCCAACTAGACATGGTTCCTTAAATCCTGGTACCACTGGAGTTTCACCTTATGTTAATGGTGCAAGAGGTGTGACAATAAATTTGTGA 1464 0.4522 MAIAPAYEANLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGEKLLPFWGKGAPALGQKFLVRRARVPASTHYYKNGVDIETPMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLVFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANVASSIAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLLLPVTNSRGAFYGGSGGVQFLKQLVAAMFVIGWNIVSTTIILLVIQVFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHGSLNPGTTGVSPYVNGARGVTINL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02264 487 Pfam Ammonium Transporter Family 24 449 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vivi6g02264 487 Gene3D Ammonium transporter AmtB like domains 5 452 IPR029020 -
Vivi6g02264 487 FunFam Ammonium transporter 6 452 - -
Vivi6g02264 487 NCBIfam ammonium transporter 22 449 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi6g02264 487 PRINTS Rhesus blood group protein signature 264 286 IPR002229 GO:0005886
Vivi6g02264 487 PRINTS Rhesus blood group protein signature 138 154 IPR002229 GO:0005886
Vivi6g02264 487 PRINTS Rhesus blood group protein signature 319 337 IPR002229 GO:0005886
Vivi6g02264 487 PRINTS Rhesus blood group protein signature 233 251 IPR002229 GO:0005886
Vivi6g02264 487 ProSitePatterns Ammonium transporters signature. 194 219 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vivi6g02264 487 PANTHER AMMONIUM TRANSPORTER MEP2 9 459 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vivi6g02264 487 SUPERFAMILY Ammonium transporter 17 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02264 Vivi-Chr6 100354959 100360036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02264 131 487 Inorganic Solute Cotransporters AT2G38290 78.830 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02264 K03320 - gmx:100790119 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02264 6 100354959 100360036 Vivi6g02264 6 100354959 100360036 ECH