Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02263 ATGGAGTGTAACATTCCTTCAGGGCCATCTTCAAAGACAAAGGAGAAGAAAAAGGGTGCAAAGAAAAGCAAAGGATCATCATCATCAGTGAAACTCTCAACCGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGGCATAGAATCAGTGACAGGTTCAAGATTCTTCAGAGCATGGTCCCTGGAGGAAGTAAAATGGACACTGTTTCTATGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTTTGTTTCATCAAACAATGATTAATAACTTTGTTGATGATAGTGATCATCGTGAGTGTTTTTCACCAATGTTGCTTCCAAATGGTAACATCATTGATCAGCATAATGTTTTAAGTTCTGTTGAATCTGGCCAGAATTTGCCACAGTTGCCACTAGAGCAGTTTTGTTTTCAACAAGGTGGTGAAGATTTCAAAACCATGTTTAATGCTACTATGAAATATTAG 477 0.3711 MECNIPSGPSSKTKEKKKGAKKSKGSSSSVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQILFHQTMINNFVDDSDHRECFSPMLLPNGNIIDQHNVLSSVESGQNLPQLPLEQFCFQQGGEDFKTMFNATMKY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02263 158 SMART finulus 38 87 IPR011598 GO:0046983
Vivi6g02263 158 Pfam Helix-loop-helix DNA-binding domain 42 81 IPR011598 GO:0046983
Vivi6g02263 158 Gene3D - 36 89 IPR036638 GO:0046983
Vivi6g02263 158 FunFam Transcription factor LAX PANICLE 35 97 - -
Vivi6g02263 158 MobiDBLite consensus disorder prediction 1 45 - -
Vivi6g02263 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 32 81 IPR011598 GO:0046983
Vivi6g02263 158 CDD bHLH_AtIND_like 34 92 - -
Vivi6g02263 158 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 143 IPR045843 GO:0003700|GO:0006355
Vivi6g02263 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02263 Vivi-Chr6 100258583 100259220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02263 29 85 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 63.158 8.89e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g02263 HLH 4.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02263 - - gmx:113000114 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g02263 6 100258583 100259220 Vivi6g02263 6 100258583 100259220 ECH