Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02258 ATGGCTTCAAATTTCTCAACAATAACAGAGAAGAAAAATGTTTTGTTCATAATAGGTGCAACTGGAACTGGAAAAACTAAACTTTCTATTAACATAGGTATTCAATTCCCTTCCGAAATTATTAATTCAGACAAAATTCAAGTCTATAAGGGTCTTGACATTGTCACCAACAAGGTACCAGAATCCGAGCAATGTTCGATTCCACATCACTTGTTAGGCATCATAGATGATCCTGATTATGATTTCACCGTGAATGATTTCTGCAAGAAAATGGTTGAAACCCTAGATTCCATTATTGAAAATGGACATCTACCCATTATTGTAGGTGGTTCAAATTCCTATCTACAAGTACTAGTAGATGACCCAATCTATGCATTTCGTTCAAAATATAATTGTTGTTTCATTTGGGTGGATGTAGCTTTGTCTATTTTATTTCCTTATTTAGACATGAGAGTTAATGAAATGGTTAAGGCAGGTCTTATTGATGAAATTAGAAACTTTTTTGTACCTGAAGCAAATTGCACCAGGGGGATTAGAAGGGCAATTGGTGTTCCTGAGCTTCAACGTTATTTTGAGATAGAAAATGATAAAGGTGTTGATGAGGGTCGTAAAGAAAAGATACTTAAGGAAGCTATTGCAGAAATGAAAGAAAACACGTGCAAATTGGCTGAAAATCAACTCATAAAGATTAATAATATGGTTAATAGCCTTGGGTGGAACATGCACAAAATTGATTCTACAAAGGTTTTTGAAGCTGTTTTAAATGGAGAAGATTATCAACATTTGTATCAAGAAATTGTGATTAAGCCAAGCTTTGAGATTGTTAAGAGGTTTTTAGAGGACCAACTCATGAAAACACAGAGGAACTACTAG 873 0.3414 MASNFSTITEKKNVLFIIGATGTGKTKLSINIGIQFPSEIINSDKIQVYKGLDIVTNKVPESEQCSIPHHLLGIIDDPDYDFTVNDFCKKMVETLDSIIENGHLPIIVGGSNSYLQVLVDDPIYAFRSKYNCCFIWVDVALSILFPYLDMRVNEMVKAGLIDEIRNFFVPEANCTRGIRRAIGVPELQRYFEIENDKGVDEGRKEKILKEAIAEMKENTCKLAENQLIKINNMVNSLGWNMHKIDSTKVFEAVLNGEDYQHLYQEIVIKPSFEIVKRFLEDQLMKTQRNY 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02258 290 FunFam Adenylate isopentenyltransferase 5, chloroplastic 141 241 - -
Vivi6g02258 290 Pfam IPP transferase 128 227 - -
Vivi6g02258 290 Pfam IPP transferase 47 121 - -
Vivi6g02258 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 123 IPR027417 -
Vivi6g02258 290 Gene3D - 11 279 IPR027417 -
Vivi6g02258 290 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 11 279 IPR039657 -
Vivi6g02258 290 Coils Coil 276 290 - -
Vivi6g02258 290 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 141 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02258 Vivi-Chr6 99798234 99799112 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02258 128 282 C2H2 Transcription Factor Family AT2G27760 31.667 1.35e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02258 K10760 - mtr:11405692 397.512