Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02224 ATGGAAATGGCTTCCAGCCCTCGTTCCGTTGAAGAGATCTTCAAGGATTTCAACGCTCGTAGAACCGCTGTTCTCCGTGCTCTCACTCTTGATGTTGATGAATTTTACGGTCTCTGTGATCCAGATAAGGATAATTTGTGTCTCTATGGACATGGGAATGAAAGCTGGGAAGTGACTCTGCCAGCGGAGGAAGTTCCGCCGGAGCTTCCTGAGCCGGCACTTGGGATTAATTTTGCTAGAGATGGGATGAACCGGAGAGACTGGCTTTCGCTTGTTGCTGTACACAGTGATTCTTGGTTGCTTTCTGTAGCATTCTACCTTGGAGCTCGTCTTAACCGGAATGAAAGGAAACGTTTGTTTAGTTTAATCAACGAACTTCCCACCGTTTTTGAAGTTGTGACCGACAGGAAGCCGATTAAGGACAACAAGCCGGCAGCAGACAGTGGAAGCAAATCCAGAGGTAGCACCAAGAGATCAAGTGATGGGCAAGTCAAAAGCAACCCAAAGTTTCCTGCAGACGATGGTTATGAGGAGGAGGAAGACGAGCACAGCGAAACACTTTGCGGGACCTGTGGCGGAAACTACAATGCGGACGAGTTTTGGATTGGCTGTGATATATGTGAGAGGTGGTACCACGGGAAATGTGTGAAGATCACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAGTGCCCTTCATGCAGCTTGAGAAGGCCCAGACCCTAG 726 0.4835 MEMASSPRSVEEIFKDFNARRTAVLRALTLDVDEFYGLCDPDKDNLCLYGHGNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPADDGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSLRRPRP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02224 241 Pfam PHD-finger 188 235 IPR019787 -
Vivi6g02224 241 PANTHER CPG BINDING PROTEIN 6 240 IPR045104 GO:0006355|GO:0042393
Vivi6g02224 241 SMART PHD_3 187 235 IPR001965 -
Vivi6g02224 241 CDD PHD_AL_plant 187 237 IPR044104 -
Vivi6g02224 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Vivi6g02224 241 FunFam PHD finger alfin-like protein 180 236 - -
Vivi6g02224 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Vivi6g02224 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Vivi6g02224 241 MobiDBLite consensus disorder prediction 140 177 - -
Vivi6g02224 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Vivi6g02224 241 MobiDBLite consensus disorder prediction 148 166 - -
Vivi6g02224 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02224 Vivi-Chr6 98395244 98397644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02224 4 240 Alfin-like Transcription Factor Family AT5G05610 75.105 3.42e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vivi6g02224 Alfin 8.3e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02224 K26274 - gmx:100782478 441.81