Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02223 ATGGGTTCCACTCGCTCAGATGATGGCTCTGCCATACACAAAGAACGCTTACGCTGGACACAACAACTCCATGATCTCTTTGTGGACGCTGTAAATAGGCTTGGGGGCCCTGATAGGGCAACACCAAAGGGCATATTGAAGGTAATGAAGGCTATGGATATTTCAAATTTGAACATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATTTCCAAGTTGATTCCAGAATCCACCACTAGAGGAAAGATTGAGAAGAGAGGTGTATCACATATACTTCCAAATTTCTGTTCTATATCAGCTCTTCAGTTAAAGGAAGTCCTTCAAATGCAAGCAGAGGTGCACGAACGCATGAATGACAGAGTTGAGGTTCAGAAAAGCTTGAAGATGAAAATTGAAGCACAAGGAAAGTACCTAGATAGAATTGGACAGAGTAGTCAGATCAAAACAATTACAAGAAAAGCTTGCAAGTCTTTTGTTGGTAGAGCTACACCTCTGCCCTCTCTTTCCGAGGAATCTGAATCCTTAAGAACACAATCAGAGGAAGAACATCGAACAGCCAAAAAGAAAAAGATCACCGAAGATGATGACAGTGTTTTTCCTGCAGATTTTGAACTAGGATCATCTACAATCTCAGAATTCTGCAACCAAACTTTGAATCTTTCTTGGAGCCAGCTAGCTGAAGCAACATGCCAATCACCTTTGGTGACTAGTTTCATATTATAG 726 0.4091 MGSTRSDDGSAIHKERLRWTQQLHDLFVDAVNRLGGPDRATPKGILKVMKAMDISNLNIYHVKSHLQKYRISKLIPESTTRGKIEKRGVSHILPNFCSISALQLKEVLQMQAEVHERMNDRVEVQKSLKMKIEAQGKYLDRIGQSSQIKTITRKACKSFVGRATPLPSLSEESESLRTQSEEEHRTAKKKKITEDDDSVFPADFELGSSTISEFCNQTLNLSWSQLAEATCQSPLVTSFIL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02223 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 74 IPR017930 -
Vivi6g02223 241 Pfam MYB-CC type transfactor, LHEQLE motif 103 142 IPR025756 -
Vivi6g02223 241 MobiDBLite consensus disorder prediction 175 193 - -
Vivi6g02223 241 FunFam Two-component response regulator 10 74 - -
Vivi6g02223 241 Gene3D - 13 74 - -
Vivi6g02223 241 SUPERFAMILY Homeodomain-like 12 71 IPR009057 -
Vivi6g02223 241 Pfam Myb-like DNA-binding domain 17 70 IPR001005 -
Vivi6g02223 241 NCBIfam myb-like DNA-binding domain, SHAQKYF class 14 72 IPR006447 GO:0003677
Vivi6g02223 241 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 200 IPR044848 GO:0003700
Vivi6g02223 241 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02223 Vivi-Chr6 98391946 98395089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02223 1 139 G2-like Transcription Factor Family AT4G28610 44.138 4.22e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g02223 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02223 - - psat:127127459 419.853