Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02181 ATGCGGATATCATATGATAATAATGAATCATATCACCATTCAGTGACTTGTTGCGAAGAAGATCGATGGATGCAAGCTCGACCTCACAAAAATCTGTCTATAACAGATCATTCAACTTTGAGAAAATGTCTGTTGCACCCGTTTCATGCCATGTGTGGTCGTAAGTCAAATTCCAAATTGAGCATCTCGAGTCAGGTTGCATCTGCTGCTACTTCATCTGACTTGATCATCTTAAGTCAGGATCCATCTCCTTCCAGTTCATCTGATTTGAACATCTTGACTCACGCTCCAACTGCTACCAGTTCATTCGATTTCAACATCTTGAATCAAGGTGCAACTACCACTATCTCATCTGATTTCAACATCTTGAATAATGGTGCAACTGCTGTTACCTCATTTGATTTCAACATCTTGAACAACGGTGAAGCCTCTAGTTCATCTTTGGTTTCTGATAACATTCAAAACAATAGATACGACGTGTTTATCAGTTTCAGAGGCTCCGACACGCGCAACACCTTTGTCGACCATCTCTACGCTCATCTCACTGGAAAAGGTATTTTTACTTTCAAAGATGACATGCAGCTTCACAAAGGTGGATCCATTTCAACCCAACTTCGACACGCAATAAAAAACTCGCGTGTTTCTGTAGTTGTTTTCTCTGAAGATTATCCCACCTCAACCTGGTGTTTGGATGAAATGAGTACCATTGTTAATTGTTGTAGAAATGCAAAACAAATTGCTTTACCTGTTTTCTATGACGTTGATCCGTCTCATGTTCGACGACAAAATGGAGTCTATGAGTTTGCCTTTGATTTACACATCAAATCTAATCCACATAAGGTTGCTGAATGGAAGAGAGATATGACATATCTGGCTGAAATTGCCGGTTACGATATCAGGAACAAGCCAGAGTTTCAAGAGATTAAAAATATTGTTCAGTCAATAACAAAGAAGTTGGATCATAGATTCTTACCGAGTCTCGATGACCTTATAGGAATGCAACCTCATATAGAAGAATTAGAGAGCCTTTTGAAACTAAGGTCAGAATCAGATGATCGTGGTTGTCAAGTTTTAGGACTATGGGGTATGGATGGAATTGGAAAGACAACTCTTGCTAAAGTTTTGTATGACAGAATCTCATATCAATTTGATGCTTCTTGTTTCATTGAAAACGTTAGCAAAAGTTACGAAGATGGTGGCGCTATTGCTGTGCAGAAACAAATAATTCATCAAACTATAAAAGAATTTGTTTTAGAAGGATACAGTCCTTCTCAGATATCCGGAGTTATAACAAGGCTGTACAATATGAAGGTCCTTATAGTTCTTGACGATGTTGATCAACTGCTCGAGTTGAATATAAATCTCAAAATGCTTCGTCCGGGGAGTAGAATAATCATAACCACAAGAGATGTGCATATTCTTGATCTCTATGAAGCCGATATAATTCACGAGATTGGATTGATGAACGACAATGATGCGCGTGAACTTCTATGTAGAAAAGCCTTCAAAAGTGATCATTCTAGTAGTGATTATGCAGAACTTATTCCTATGATACTAAAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTGATGGGTTCATTTTTGTACAAGAGAAATACTACCCAATGGAGAGCTACTTTGGAAGGATTGGAGAATAATCCAGATAGTGGAATCATGAAAGTTCTTCAATCAAGTTTTGAAGGACTCGAGCAAAGAGAGAAAGAAATATTCTTGCACATTGCTTGCTTCTTTGATGGGGAGAGGGAGGATTATGTAAAGAGGATTCTACATGCTTGTGGACTGCAGCCTGATATTGGAATTCCAGTTATTGCTGAAAAATCGTACATAACCATTAGAAACCAGGAAATTCATATGCATAAAATGTTACAAGTGTTGGGGAAGAAAATTGTTCGGGAACAACATCCTGATCAACCAAGCTTATGGAGTAGATTGTGGCTTTATAGTGATTTCTATGATGCCATGACTACACAACCGTGCAGGTAA 2007 0.3822 MRISYDNNESYHHSVTCCEEDRWMQARPHKNLSITDHSTLRKCLLHPFHAMCGRKSNSKLSISSQVASAATSSDLIILSQDPSPSSSSDLNILTHAPTATSSFDFNILNQGATTTISSDFNILNNGATAVTSFDFNILNNGEASSSSLVSDNIQNNRYDVFISFRGSDTRNTFVDHLYAHLTGKGIFTFKDDMQLHKGGSISTQLRHAIKNSRVSVVVFSEDYPTSTWCLDEMSTIVNCCRNAKQIALPVFYDVDPSHVRRQNGVYEFAFDLHIKSNPHKVAEWKRDMTYLAEIAGYDIRNKPEFQEIKNIVQSITKKLDHRFLPSLDDLIGMQPHIEELESLLKLRSESDDRGCQVLGLWGMDGIGKTTLAKVLYDRISYQFDASCFIENVSKSYEDGGAIAVQKQIIHQTIKEFVLEGYSPSQISGVITRLYNMKVLIVLDDVDQLLELNINLKMLRPGSRIIITTRDVHILDLYEADIIHEIGLMNDNDARELLCRKAFKSDHSSSDYAELIPMILKYAQGLPLAIRVMGSFLYKRNTTQWRATLEGLENNPDSGIMKVLQSSFEGLEQREKEIFLHIACFFDGEREDYVKRILHACGLQPDIGIPVIAEKSYITIRNQEIHMHKMLQVLGKKIVREQHPDQPSLWSRLWLYSDFYDAMTTQPCR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02181 668 Pfam NB-ARC domain 341 561 IPR002182 GO:0043531
Vivi6g02181 668 SMART till_3 157 294 IPR000157 GO:0007165
Vivi6g02181 668 Gene3D - 310 482 IPR027417 -
Vivi6g02181 668 SUPERFAMILY "Winged helix" DNA-binding domain 559 660 IPR036390 -
Vivi6g02181 668 Pfam TIR domain 158 320 IPR000157 GO:0007165
Vivi6g02181 668 ProSiteProfiles TIR domain profile. 156 319 IPR000157 GO:0007165
Vivi6g02181 668 SUPERFAMILY Toll/Interleukin receptor TIR domain 154 297 IPR035897 -
Vivi6g02181 668 Gene3D - 488 571 IPR042197 -
Vivi6g02181 668 Gene3D - 131 291 IPR035897 -
Vivi6g02181 668 PRINTS Disease resistance protein signature 432 446 - -
Vivi6g02181 668 PRINTS Disease resistance protein signature 522 536 - -
Vivi6g02181 668 PRINTS Disease resistance protein signature 357 372 - -
Vivi6g02181 668 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 158 660 IPR044974 GO:0006952
Vivi6g02181 668 FunFam Disease resistance protein (TIR-NBS-LRR class) 154 321 - -
Vivi6g02181 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 581 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02181 Vivi-Chr6 97378862 97386646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02181 331 653 WRKY Transcription Factor Family AT5G45050 34.862 2.70e-51 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02181 - - vvo:131641228 1171.76