Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02180 ATGGATGCAAGCTCGACCTCACAAAAATCTGATCATTCAACTTTGAGAAAATGTCTGTTGCACCCGTTTCATGCCATGTGTGGTCGTAAGTCAAATTCCAAATTGAGCATCTCGAGTCAGGTTGCATCTGCTGCTACTTCATCTGACTTGATCATCTTAAGTCAGGATCCATCTCCTTCCAGTTCATCTGATTTGAACATCTTGACTCACGCTCCAACTGCTACCAGTTCATTCGATTTCAACATCTTGAATCAAGGTGCAACTACCACTATCTCATCTGATTTCAACATCTTGAATAATGGTGCAACTGCTGTTACCTCATTTGATTTCAACATCTTGAACAACGGTGAAGCCTCTAGTTCATCTTTGGTTTCTGATAACATTCAAAACAATAGATACGACGTGTTTATCAGTTTCAGAGGCTCCGACACGCGCAACACCTTTGTCGACCATCTCTACGCTCATCTCACTGGAAAAGGTATTTTTACTTTCAAAGATGACATGCAGCTTCACAAAGGTGGATCCATTTCAACCCAACTTCGACACGCAATAAAAAACTCGCGTGTTTCTGTAGTTGTTTTCTCTGAAGATTATCCCACCTCAACCTGGTGTTTGGATGAAATGAGTACCATTGTTAATTGTTGTAGAAATGCAAAACAAATTGCTTTACCTGTTTTCTATGACGTTGATCCGTCTCATGTTCGACGACAAAATGGAGTCTATGAGTTTGCCTTTGATTTACACATCAAATCTAATCCACATAAGGTTGCTGAATGGAAGAGAGATATGACATATCTGGCTGAAATTGCCGGTTACGATATCAGGAACAAGCCAGAGTTTCAAGAGATTAAAAATATTGTTCAGTCAATAACAAAGAAGTTGGATCATAGATTCTTACCGAGTCTCGATGACCTTATAGGAATGCAACCTCATATAGAAGAATTAGAGAGCCTTTTGAAACTAAGGTCAGAATCAGATGATCGTGGTTGTCAAGTTTTAGGACTATGGGGTATGGATGGAATTGGAAAGACAACTCTTGCTAAAGTTTTGTATGACAGAATCTCATATCAATTTGATGCTTCTTGTTTCATTGAAAACGTTAGCAAAAGTTACGAAGATGGTGGCGCTATTGCTGTGCAGAAACAAATAATTCATCAAACTATAAAAGAATTTGTTTTAGAAGGATACAGTCCTTCTCAGATATCCGGAGTTATAACAAGGCTGTACAATATGAAGGTCCTTATAGTTCTTGACGATGTTGATCAACTGCTCGAGTTGAATATAAATCTCAAAATGCTTCGTCCGGGGAGTAGAATAATCATAACCACAAGAGATGTGCATATTCTTGATCTCTATGAAGCCGATATAATTCACGAGATTGGATTGATGAACGACAATGATGCGCGTGAACTTCTATGTAGAAAAGCCTTCAAAAGTGATCATTCTAGTAGTGATTATGCAGAACTTATTCCTATGATACTAAAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTGATGGGTTCATTTTTGTACAAGAGAAATACTACCCAATGGAGAGCTACTTTGGAAGGATTGGAGAATAATCCAGATAGTGGAATCATGAAAGTTCTTCAATCAAGTTTTGAAGGACTCGAGCAAAGAGAGAAAGAAATATTCTTGCACATTGCTTGCTTCTTTGATGGGGAGAGGGAGGATTATGTAAAGAGGATTCTACATGCTTGTGGACTGCAGCCTGATATTGGAATTCCAGTTATTGCTGAAAAATCGTACATAACCATTAGAAACCAGGAAATTCATATGCATAAAATGTTACAAGTGTTGGGGAAGAAAATTGTTCGGGAACAACATCCTGATCAACCAAGCTTATGGAGTAGATTGTGGCTTTATAGTGATTTCTATGATGCCATGACTACACAACCGGTAATATATCTCTCCCTCTTCTCTCATGATAAAAATGGTAATACATTTCTTCATATATATTTTACATTTCCATTATTTTTCTTTTAA 2010 0.3766 MDASSTSQKSDHSTLRKCLLHPFHAMCGRKSNSKLSISSQVASAATSSDLIILSQDPSPSSSSDLNILTHAPTATSSFDFNILNQGATTTISSDFNILNNGATAVTSFDFNILNNGEASSSSLVSDNIQNNRYDVFISFRGSDTRNTFVDHLYAHLTGKGIFTFKDDMQLHKGGSISTQLRHAIKNSRVSVVVFSEDYPTSTWCLDEMSTIVNCCRNAKQIALPVFYDVDPSHVRRQNGVYEFAFDLHIKSNPHKVAEWKRDMTYLAEIAGYDIRNKPEFQEIKNIVQSITKKLDHRFLPSLDDLIGMQPHIEELESLLKLRSESDDRGCQVLGLWGMDGIGKTTLAKVLYDRISYQFDASCFIENVSKSYEDGGAIAVQKQIIHQTIKEFVLEGYSPSQISGVITRLYNMKVLIVLDDVDQLLELNINLKMLRPGSRIIITTRDVHILDLYEADIIHEIGLMNDNDARELLCRKAFKSDHSSSDYAELIPMILKYAQGLPLAIRVMGSFLYKRNTTQWRATLEGLENNPDSGIMKVLQSSFEGLEQREKEIFLHIACFFDGEREDYVKRILHACGLQPDIGIPVIAEKSYITIRNQEIHMHKMLQVLGKKIVREQHPDQPSLWSRLWLYSDFYDAMTTQPVIYLSLFSHDKNGNTFLHIYFTFPLFFF 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02180 669 SMART till_3 132 269 IPR000157 GO:0007165
Vivi6g02180 669 PRINTS Disease resistance protein signature 407 421 - -
Vivi6g02180 669 PRINTS Disease resistance protein signature 332 347 - -
Vivi6g02180 669 PRINTS Disease resistance protein signature 497 511 - -
Vivi6g02180 669 FunFam Disease resistance protein (TIR-NBS-LRR class) 129 296 - -
Vivi6g02180 669 Pfam TIR domain 133 295 IPR000157 GO:0007165
Vivi6g02180 669 Gene3D - 106 266 IPR035897 -
Vivi6g02180 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 556 IPR027417 -
Vivi6g02180 669 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 133 636 IPR044974 GO:0006952
Vivi6g02180 669 Gene3D - 285 457 IPR027417 -
Vivi6g02180 669 Pfam NB-ARC domain 316 536 IPR002182 GO:0043531
Vivi6g02180 669 SUPERFAMILY Toll/Interleukin receptor TIR domain 129 272 IPR035897 -
Vivi6g02180 669 ProSiteProfiles TIR domain profile. 131 294 IPR000157 GO:0007165
Vivi6g02180 669 SUPERFAMILY "Winged helix" DNA-binding domain 534 635 IPR036390 -
Vivi6g02180 669 Gene3D - 463 546 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02180 Vivi-Chr6 97378862 97386652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02180 306 628 WRKY Transcription Factor Family AT5G45050 34.862 3.21e-51 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02180 - - vvo:131641228 1190.64