Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g02178 ATGCCTGATGGCAAAATTGAACAATTATGGACAGGCATCCAGCGTCTCCCCTATTTAAAAAGGATGGATTTGAGCAACTCCAAAAACCTTAAGATGACTCCATGCTTTGAAATGATACAAAATCTTGAGCGACTAGATCTTACAGGATGCATAAACTTGTTGCATGTGCATCCATCAATTGGACTTCTTACAAAACTTGTATTCTTGAGTTTGCAGAAATGTAGTAGTTTAGTCAGCCTTGATTTTGGAAATGCATCAAGATTAAGGTCTTTACGAGTTATGCGTCTTTCTGATTGCACCAAACTTAAAAATACTCCGGAGTTCAATGGATTAGTAAGTCTTCAGTATCTTGAAATGGATCAATGTTCAAGTTTGTCCATGTTTCATAAATCAGTTAAGGATCTTGCAAATCTAAAATTCTTAAGTTTGAGAAACTGCACAAATCTTATTGAAATACCTCATACTTTTTATAAGATGACATCTCTTATAACTTTAGATCTTTGCGGATGCTCTAAATTTACGATATTTCCCCTAGGAGGGATTTACACTTCTATCATGCAACCTTTGATTTATTTAGACTTAAGCTTTTGCGGTATTACTACAATACCTGATGATATTGGAGGATTAAGGTGTTTGGAAAGACTAAATCTTCAAGGAAATAACTTTAATAAACTTCCTTCCTTGAGGTCTCTTCGCCGTCTATCATATTTAAACTTGTCTCATTGCCATAAGCTTCAAAGTTTTCCTGAGCTCCCAATAGAAAGTGGTGAATCAGATTCAATGGGAAGATATTTTCAAACATCTGGATCGTGTAACCATAGATCGGGATTATATATTTTTGACTCTCCCCTTAGCAATACTGGGCTTTTTTCCCACCAGGAATATGTTCAGGAATATCTTTATTGGCTCTTCACTACATGGGTACGAAGACTACTTCGGGAACCTCTTCATTTTCGGTGTGGCTTTGACATTGTTCTTCCTTGGGGTGGTGGTGGTGTTCCTGCAGATCTTTCCTTTCCAGAGTTTTTTGGTCGTCCGTTTGCAGGGGATTCTATAGGAAGGATAAATAACACTGGTATGCATGATGACTGGCTTGGGTTTCTCTTTTATGTAAAATTTGAGTTAAAAAGTGACCATGCATCATCTAGTTCCTCACTCTCTTCGCCGCCATTGCCATGTCCTTTTTATCTTTCCTTTGAGAACGAACACACGGAAGAACGATTTGATATGTCATTCAATTTGGATGAGACTTGTGGCAACCATTATATTTTGATAATCTATATATCTCGGGAGCACTGCCATTTTGTAAAAACAGGAGCGCAAATCAAATTTAAAGCCCGCAAAGGTTTGATTTTGATGGAATGCGGTTTGCGAGTCATGACCAAGGGAGACATAGAGGACTCAAGAATGGATATGGTAGCACCTCTACCTTTATCAATTGTCAAAGTAGAACAAAGCTGGGTTGAGCCTAAAATCCAACTTCCTTACAATTGGTTAGTTTCTGACAAAGATGAAGCCGAGAAGAATGCAGCCAAAGAGAAAGAAACCGATCTCTTTAATCTTGGCCTTTTTACCGAAAGACCATACTGA 1590 0.3786 MPDGKIEQLWTGIQRLPYLKRMDLSNSKNLKMTPCFEMIQNLERLDLTGCINLLHVHPSIGLLTKLVFLSLQKCSSLVSLDFGNASRLRSLRVMRLSDCTKLKNTPEFNGLVSLQYLEMDQCSSLSMFHKSVKDLANLKFLSLRNCTNLIEIPHTFYKMTSLITLDLCGCSKFTIFPLGGIYTSIMQPLIYLDLSFCGITTIPDDIGGLRCLERLNLQGNNFNKLPSLRSLRRLSYLNLSHCHKLQSFPELPIESGESDSMGRYFQTSGSCNHRSGLYIFDSPLSNTGLFSHQEYVQEYLYWLFTTWVRRLLREPLHFRCGFDIVLPWGGGGVPADLSFPEFFGRPFAGDSIGRINNTGMHDDWLGFLFYVKFELKSDHASSSSSLSSPPLPCPFYLSFENEHTEERFDMSFNLDETCGNHYILIIYISREHCHFVKTGAQIKFKARKGLILMECGLRVMTKGDIEDSRMDMVAPLPLSIVKVEQSWVEPKIQLPYNWLVSDKDEAEKNAAKEKETDLFNLGLFTERPY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g02178 529 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 86 178 - -
Vivi6g02178 529 SUPERFAMILY L domain-like 5 250 - -
Vivi6g02178 529 Gene3D Ribonuclease Inhibitor 106 183 IPR032675 -
Vivi6g02178 529 Pfam Leucine rich repeat 191 243 IPR001611 GO:0005515
Vivi6g02178 529 Gene3D Ribonuclease Inhibitor 3 105 IPR032675 -
Vivi6g02178 529 Gene3D Ribonuclease Inhibitor 184 287 IPR032675 -
Vivi6g02178 529 ProSiteProfiles Leucine-rich repeat profile. 211 232 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g02178 Vivi-Chr6 97295139 97299095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g02178 86 250 WRKY Transcription Factor Family AT4G12020 34.132 2.45e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g02178 - - vvo:131609373 1048.88